From shells to sequences: A proof-of-concept study for on-site analysis of hemolymphatic circulating cell-free DNA from sentinel mussels using Nanopore technology

被引:1
作者
Ferchiou, Sophia [1 ]
Caza, France [1 ]
Villemur, Richard [1 ]
Betoulle, Stephane [1 ,2 ]
St-Pierre, Yves [1 ]
机构
[1] INRS, Ctr Armand Frappier St Technol, 531 Boul Prairies, Laval, PQ H7V 1B7, Canada
[2] Univ Reims, Lab Ecotoxicol, SEBIO Stress Environnementaux & Biosurveillance Mi, UMR-I 02, Campus Moulin Housse, F-51687 Reims, France
关键词
Climate change; Liquid biopsy; Mussels; Biodiversity; Self/non-self DNA; MITOCHONDRIAL-DNA; MYTILUS-EDULIS; LIQUID BIOPSY; MARINE; CANCER; TEMPERATURE; DIVERSITY; STRESS; TRANSMISSION; DEGRADATION;
D O I
10.1016/j.scitotenv.2024.172969
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
ONT platform is well-suited for LB in sentinel blue mussels in remote and challenging conditions, enabling faster fieldwork for conservation strategies and resource management in diverse settings.
引用
收藏
页数:16
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共 117 条
[31]   Feasibility of circulating tumor DNA analysis in dogs with naturally occurring malignant and benign splenic lesions [J].
Favaro, Patricia Filippsen ;
Stewart, Samuel D. ;
McDonald, Bradon R. ;
Cawley, Jacob ;
Contente-Cuomo, Tania ;
Wong, Shukmei ;
Hendricks, William P. D. ;
Trent, Jeffrey M. ;
Khanna, Chand ;
Murtaza, Muhammed .
SCIENTIFIC REPORTS, 2022, 12 (01)
[32]   Applying the concept of liquid biopsy to monitor the microbial biodiversity of marine coastal ecosystems [J].
Ferchiou, Sophia ;
Caza, France ;
de Boissel, Philippine Granger Joly ;
Villemur, Richard ;
St-Pierre, Yves .
ISME COMMUNICATIONS, 2022, 2 (01)
[33]   Skin and Blood Microbial Signatures of Sedentary and Migratory Trout (Salmo trutta) of the Kerguelen Islands [J].
Ferchiou, Sophia ;
Caza, France ;
Villemur, Richard ;
Labonne, Jacques ;
St-Pierre, Yves .
FISHES, 2023, 8 (04)
[34]   Species- and site-specific circulating bacterial DNA in Subantarctic sentinel mussels Aulacomya atra and Mytilus platensis [J].
Ferchiou, Sophia ;
Caza, France ;
Villemur, Richard ;
Betoulle, Stephane ;
St-Pierre, Yves .
SCIENTIFIC REPORTS, 2022, 12 (01)
[35]   Restructuring of plankton genomic biogeography in the surface ocean under climate change [J].
Fremont, Paul ;
Gehlen, Marion ;
Vrac, Mathieu ;
Leconte, Jade ;
Delmont, Tom O. ;
Wincker, Patrick ;
Iudicone, Daniele ;
Jaillon, Olivier .
NATURE CLIMATE CHANGE, 2022, 12 (04) :393-+
[36]   Insights into the circulating microbiome of Atlantic and Greenland halibut populations: the role of species-specific and environmental factors [J].
Fronton, Fanny ;
Ferchiou, Sophia ;
Caza, France ;
Villemur, Richard ;
Robert, Dominique ;
St-Pierre, Yves .
SCIENTIFIC REPORTS, 2023, 13 (01)
[37]   A review of the combined effects of climate change and other local human stressors on the marine environment [J].
Gissi, Elena ;
Manea, Elisabetta ;
Mazaris, Antonios D. ;
Fraschetti, Simonetta ;
Almpanidou, Vasiliki ;
Bevilacqua, Stanislao ;
Coll, Marta ;
Guarnieri, Giuseppe ;
Lloret-Lloret, Elena ;
Pascual, Marta ;
Petza, Dimitra ;
Rilov, Gil ;
Schonwald, Maura ;
Stelzenmuller, Vanessa ;
Katsanevakis, Stelios .
SCIENCE OF THE TOTAL ENVIRONMENT, 2021, 755
[38]   The Influence of the Gut Microbiome on Cancer, Immunity, and Cancer Immunotherapy [J].
Gopalakrishnan, Vancheswaran ;
Helmink, Beth A. ;
Spencer, Christine N. ;
Reuben, Alexandre ;
Wargo, Jennifer A. .
CANCER CELL, 2018, 33 (04) :570-580
[39]   ACTIVITY OF PHOSPHOHYDROLYTIC ENZYMES IN WATERS [J].
Grzyb, Jacek ;
Fraczek, Krzysztof .
ECOLOGICAL CHEMISTRY AND ENGINEERING A-CHEMIA I INZYNIERIA EKOLOGICZNA A, 2012, 19 (06) :583-589
[40]   VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses [J].
Guo, Jiarong ;
Bolduc, Ben ;
Zayed, Ahmed A. ;
Varsani, Arvind ;
Dominguez-Huerta, Guillermo ;
Delmont, Tom O. ;
Pratama, Akbar Adjie ;
Gazitua, M. Consuelo ;
Vik, Dean ;
Sullivan, Matthew B. ;
Roux, Simon .
MICROBIOME, 2021, 9 (01)