Research on Bitter Peptides in the Field of Bioinformatics: A Comprehensive Review

被引:0
作者
Liu, Shanghua [1 ]
Shi, Tianyu [1 ]
Yu, Junwen [1 ]
Li, Rui [1 ]
Lin, Hao [1 ]
Deng, Kejun [1 ]
机构
[1] Univ Elect Sci & Technol China, Sch Life Sci & Technol, Ctr Informat Biol, Chengdu 610054, Peoples R China
基金
中国国家自然科学基金;
关键词
bitter peptides; bitterness mechanism; database; predictive models; bioinformatics; TASTE RECEPTORS; BIOACTIVE PEPTIDES; APPLICABILITY DOMAIN; NEURAL-NETWORK; PROTEIN; FOOD; PREDICTION; SUPPORT; IDENTIFICATION; MODELS;
D O I
10.3390/ijms25189844
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Bitter peptides are small molecular peptides produced by the hydrolysis of proteins under acidic, alkaline, or enzymatic conditions. These peptides can enhance food flavor and offer various health benefits, with attributes such as antihypertensive, antidiabetic, antioxidant, antibacterial, and immune-regulating properties. They show significant potential in the development of functional foods and the prevention and treatment of diseases. This review introduces the diverse sources of bitter peptides and discusses the mechanisms of bitterness generation and their physiological functions in the taste system. Additionally, it emphasizes the application of bioinformatics in bitter peptide research, including the establishment and improvement of bitter peptide databases, the use of quantitative structure-activity relationship (QSAR) models to predict bitterness thresholds, and the latest advancements in classification prediction models built using machine learning and deep learning algorithms for bitter peptide identification. Future research directions include enhancing databases, diversifying models, and applying generative models to advance bitter peptide research towards deepening and discovering more practical applications.
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页数:23
相关论文
共 214 条
  • [101] Data-Driven Elucidation of Flavor Chemistry
    Kou, Xingran
    Shi, Peiqin
    Gao, Chukun
    Ma, Peihua
    Xing, Huadong
    Ke, Qinfei
    Zhang, Dachuan
    [J]. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2023, 71 (18) : 6789 - 6802
  • [102] BITTERNESS AND CHEMICAL STRUCTURE
    KUBOTA, T
    KUBO, I
    [J]. NATURE, 1969, 223 (5201) : 97 - &
  • [103] A comprehensive database of cheese-derived bitter peptides and correlation to their physical properties
    Kuhfeld, R. F.
    Eshpari, H.
    Atamer, Z.
    Dallas, D. C.
    [J]. CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION, 2024, 64 (27) : 10105 - 10119
  • [104] Kwatra D., 2016, Current Pharmacology Reports, V2, P34, DOI [DOI 10.1007/S40495-016-0045-2, 10.1007/s40495-016-0045-2]
  • [105] Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites
    Laurie, ATR
    Jackson, RM
    [J]. BIOINFORMATICS, 2005, 21 (09) : 1908 - 1916
  • [106] Deep learning
    LeCun, Yann
    Bengio, Yoshua
    Hinton, Geoffrey
    [J]. NATURE, 2015, 521 (7553) : 436 - 444
  • [107] Bitter and sweet taste receptors in the respiratory epithelium in health and disease
    Lee, Robert J.
    Cohen, Noam A.
    [J]. JOURNAL OF MOLECULAR MEDICINE-JMM, 2014, 92 (12): : 1235 - 1244
  • [108] LEMIEUX L, 1992, LAIT, V72, P335
  • [109] Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm
    Li, Bi-Qing
    Zhang, Yu-Hang
    Jin, Mei-Ling
    Huang, Tao
    Cai, Yu-Dong
    [J]. CURRENT BIOINFORMATICS, 2018, 13 (01) : 14 - 24
  • [110] BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models
    Li, Hong-Liang
    Pang, Yi-He
    Liu, Bin
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (22) : E129