Genome-Wide Identification of GRAS Transcription Factors and Their Functional Analysis in Salt Stress Response in Sugar Beet

被引:5
作者
Hao, Xiaolin [1 ,2 ]
Gong, Yongyong [1 ,2 ]
Chen, Sixue [3 ]
Ma, Chunquan [1 ,4 ]
Duanmu, Huizi [1 ,2 ]
机构
[1] Heilongjiang Univ, Engn Res Ctr Agr Microbiol Technol, Minist Educ, Harbin 150080, Peoples R China
[2] Heilongjiang Univ, Sch Life Sci, Heilongjiang Prov Key Lab Ecol Restorat & Resource, Harbin 150080, Peoples R China
[3] Univ Mississippi, Dept Biol, Oxford, MS 38677 USA
[4] Heilongjiang Univ, Sch Life Sci, Heilongjiang Prov Key Lab Plant Genet Engn & Biol, Harbin 150080, Peoples R China
基金
美国国家科学基金会;
关键词
sugar beet; GRAS; transcription factors; salt stress; bioinformatics; SCARECROW-LIKE; 3; DROUGHT TOLERANCE; GENE FAMILY; MERISTEM MAINTENANCE; SIGNAL-TRANSDUCTION; EXPRESSION ANALYSIS; LATERAL-SUPPRESSOR; MOLECULAR ANALYSIS; ARABIDOPSIS; BINDING;
D O I
10.3390/ijms25137132
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
GAI-RGA-and-SCR (GRAS) transcription factors can regulate many biological processes such as plant growth and development and stress defense, but there are few related studies in sugar beet. Salt stress can seriously affect the yield and quality of sugar beet (Beta vulgaris). Therefore, this study used bioinformatics methods to identify GRAS transcription factors in sugar beet and analyzed their structural characteristics, evolutionary relationships, regulatory networks and salt stress response patterns. A total of 28 BvGRAS genes were identified in the whole genome of sugar beet, and the sequence composition was relatively conservative. According to the topology of the phylogenetic tree, BvGRAS can be divided into nine subfamilies: LISCL, SHR, PAT1, SCR, SCL3, LAS, SCL4/7, HAM and DELLA. Synteny analysis showed that there were two pairs of fragment replication genes in the BvGRAS gene, indicating that gene replication was not the main source of BvGRAS family members. Regulatory network analysis showed that BvGRAS could participate in the regulation of protein interaction, material transport, redox balance, ion homeostasis, osmotic substance accumulation and plant morphological structure to affect the tolerance of sugar beet to salt stress. Under salt stress, BvGRAS and its target genes showed an up-regulated expression trend. Among them, BvGRAS-15, BvGRAS-19, BvGRAS-20, BvGRAS-21, LOC104892636 and LOC104893770 may be the key genes for sugar beet's salt stress response. In this study, the structural characteristics and biological functions of BvGRAS transcription factors were analyzed, which provided data for the further study of the molecular mechanisms of salt stress and molecular breeding of sugar beet.
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页数:19
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