Quantitative Trait Loci Mapping of First Pod Height in Faba Bean Based on Genotyping-by-Sequencing (GBS)

被引:3
作者
Lou, Shubao [1 ,2 ]
Teng, Changcai [1 ]
Hou, Wanwei [1 ]
Zhou, Xianli [1 ]
Zhang, Hongyan [1 ]
Liu, Yujiao [1 ]
机构
[1] Qinghai Univ, Acad Agr & Forestry Sci, Xining 810016, Peoples R China
[2] Heilongjiang Acad Agr Sci, Keshan Branch, Qiqihar 161005, Peoples R China
来源
AGRONOMY-BASEL | 2024年 / 14卷 / 09期
关键词
faba bean; FPH; GBS; genetic linkage map; QTL mapping; candidate genes; VICIA-FABA; GRAIN LEGUMES; RESISTANCE; YIELD; AUXIN; MODEL;
D O I
10.3390/agronomy14092013
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Candidate genes related to first pod height (FPH) traits in faba bean plants are crucial for mechanised breeding. However, reports on quantitative trait locus (QTL) mapping related to the FPH of faba bean are few, thus limiting the high-quality development of the faba bean industry to a certain extent. The identification and screening of candidate genes related to FPH is extremely urgent for the advancement of mechanised breeding for faba bean. In this study, a high-density genetic linkage map was constructed using genotyping-by-sequencing (GBS) of an F3 population and QTLs (genes) related to FPH were identified. The genetic linkage map contained seven linkage groups with 3012 SNP markers with an overall length of 4089.13 centimorgan (cM) and an average marker density of 1.36 cM. Thirty-eight QTLs for the first pod node (FPN) and FPH were identified (19 each for FPN and FPH). The 19 QTLs associated with FPN were located on chromosomes 1L, 1S, 2, 3, 4, 5, and 6; the 19 QTLs associated with FPH were located on chromosomes 1L, 1S, 2, 3, 5, and 6. There was a co-localisation interval of qFPN6-1 and qFPH6-1 on chromosome 6. By annotating the QTL qFPH6-1 interval, 36 genes that may be related to FPH were identified, these genes are related to plant growth and development. The results provide a basis for the precise location of QTLs related to FPH and could accelerate the breeding of faba bean varieties adapted to mechanised harvesting.
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页数:14
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共 55 条
[1]   Linkage mapping and QTL analysis of flowering time in faba bean [J].
Aguilar-Benitez, David ;
Casimiro-Soriguer, Ines ;
Maalouf, Fouad ;
Torres, Ana M. .
SCIENTIFIC REPORTS, 2021, 11 (01)
[2]   Identification of plant architecture and yield-related QTL in Vicia faba L. [J].
Avila, C. M. ;
Ruiz-Rodriguez, M. D. ;
Cruz-Izquierdo, S. ;
Atienza, S. G. ;
Cubero, J. I. ;
Torres, A. M. .
MOLECULAR BREEDING, 2017, 37 (07)
[3]   Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers [J].
Baird, Nathan A. ;
Etter, Paul D. ;
Atwood, Tressa S. ;
Currey, Mark C. ;
Shiver, Anthony L. ;
Lewis, Zachary A. ;
Selker, Eric U. ;
Cresko, William A. ;
Johnson, Eric A. .
PLOS ONE, 2008, 3 (10)
[4]   Nutritional and technological assessment of durum wheat-faba bean enriched flours, and sensory quality of developed composite bread [J].
Benayad, Asmaa ;
Taghouti, Mona ;
Benali, Aouatif ;
Aboussaleh, Youssef ;
Benbrahim, Nadia .
SAUDI JOURNAL OF BIOLOGICAL SCIENCES, 2021, 28 (01) :635-642
[5]   VC1 catalyses a key step in the biosynthesis of vicine in faba bean [J].
Bjornsdotter, Emilie ;
Nadzieja, Marcin ;
Chang, Wei ;
Escobar-Herrera, Leandro ;
Mancinotti, Davide ;
Angra, Deepti ;
Xia, Xinxing ;
Tacke, Rebecca ;
Khazaei, Hamid ;
Crocoll, Christoph ;
Vandenberg, Albert ;
Link, Wolfgang ;
Stoddard, Frederick L. ;
O'Sullivan, Donal M. ;
Stougaard, Jens ;
Schulman, Alan H. ;
Andersen, Stig U. ;
Geu-Flores, Fernando .
NATURE PLANTS, 2021, 7 (07) :923-+
[6]   Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map [J].
Carrillo-Perdomo, E. ;
Vidal, A. ;
Kreplak, J. ;
Duborjal, H. ;
Leveugle, M. ;
Duarte, J. ;
Desmetz, C. ;
Deulvot, C. ;
Raffiot, B. ;
Marget, P. ;
Tayeh, N. ;
Pichon, J. P. ;
Falque, M. ;
Martin, O. C. ;
Burstin, J. ;
Aubert, G. .
SCIENTIFIC REPORTS, 2020, 10 (01)
[7]   A QTL approach in faba bean highlights the conservation of genetic control of frost tolerance among legume species [J].
Carrillo-Perdomo, Estefania ;
Magnin-Robert, Jean-Bernard ;
Raffiot, Blandine ;
Deulvot, Chrystel ;
Floriot, Matthieu ;
Lejeune-Henaut, Isabelle ;
Marget, Pascal ;
Burstin, Judith ;
Tayeh, Nadim ;
Aubert, Gregoire .
FRONTIERS IN PLANT SCIENCE, 2022, 13
[8]  
Cheng C., 2018, THESIS NE AGR U HARB
[9]   Fine-mapping of a major locus for Fusarium wilt resistance in flax (Linum usitatissimum L.) [J].
Cloutier, S. ;
Edwards, T. ;
Zheng, C. ;
Booker, H. M. ;
Islam, T. ;
Nabetani, K. ;
Kutcher, H. R. ;
Molina, O. ;
You, F. M. .
THEORETICAL AND APPLIED GENETICS, 2024, 137 (01)
[10]   Enhancing faba bean (Vicia faba L.) genome resources [J].
Cooper, James W. ;
Wilson, Michael H. ;
Derks, Martijn F. L. ;
Smit, Sandra ;
Kunert, Karl J. ;
Cullis, Christopher ;
Foyer, Christine H. .
JOURNAL OF EXPERIMENTAL BOTANY, 2017, 68 (08) :1941-1953