A Novel Mitochondrial-Related Gene Signature for the Prediction of Prognosis and Therapeutic Efficacy in Lower-Grade Glioma

被引:0
|
作者
Yang, Jingyi [1 ]
Shen, Lei [1 ]
Zhou, Jiabin [1 ]
Wu, Ji [1 ]
Yue, Chuqiao [1 ]
Wang, Tiansheng [1 ]
Chai, Songshan [1 ]
Cai, Yuankun [1 ]
Xu, Dongyuan [1 ]
Lei, Yu [1 ]
Zhao, Jingwei [1 ]
Zhou, Yixuan [1 ]
Mei, Zhimin [1 ]
Xiong, Nanxiang [1 ]
机构
[1] Wuhan Univ, Zhongnan Hosp, Dept Neurosurg, 169,Donghu Rd, Wuhan 430071, Hubei, Peoples R China
关键词
Lower-grade glioma; Mitochondrial-related genes; Prognosis; Therapeutic efficacy; OCIA domain containing 2; EXPRESSION; SENSITIVITY;
D O I
10.1007/s10528-024-10928-w
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Lower-grade glioma (LGG) is a common primary brain tumor with a highly heterogeneous clinical presentation, and its prognosis cannot be accurately predicted by current histopathology. It has been found that mitochondria play an important role in hypoxia, angiogenesis, and energy metabolism in glioma, and mitochondrial function may have an important impact on LGG prognosis. The goal of this study was to develop a novel prognostic model based on Mitochondrial-related genes (MRGs). We first analyzed the somatic alterations profiles of MRGs in patients with LGG and found that somatic alterations were common in LGG and correlated with prognosis. Using RNA-seq data from TCGA and CGGA, 12 prognosis-related MRGs were identified to construct a mitochondrial activation score (MiAS) model by combining univariate regression and LASSO regression analysis. The model and nomogram were evaluated using the area under the ROC curve with AUC = 0.910. The model was closely correlated with the clinical characteristics of LGG patients and performed well in predicting the prognosis of LGG patients with significantly shorter overall survival (OS) time in the high-MiAS group. GSVA and GSEA results showed that oxidative stress, pro-cancer, and immune-related pathways were significantly enriched in the high-MiAS group. CIBERSORT results showed that MiAS was significantly associated with immune cell infiltration in LGG. Macrophage M1 and follicular helper T cells had increased infiltration in the high-MiAS group. TIDE predicted a better immunotherapy outcome in patients in the low-MiAS group. Finally, using data from the CTRPv2 and GDSC2 datasets to assess chemotherapy response in LGG, it was predicted that the chemotherapeutic agents AZD6482, MG-132, and PLX-4720 might be potential agents for patients in the high-MiAS group of LGG. In addition, we performed in vitro experiments and found that knockdown of OCIAD2 expression reduced the abilities of glioma cells to proliferate, migrate, and invade. In contrast, overexpression of OCIAD2 enhanced these abilities of glioma cells. This study found that MRGs were correlated with LGG patient prognosis, which is expected to provide new treatment strategies for LGG patients with different MiAS.
引用
收藏
页数:27
相关论文
共 50 条
  • [21] Development of a Prognostic Five-Gene Signature for Diffuse Lower-Grade Glioma Patients
    Zhang, Qiang
    Liu, Wenhao
    Luo, Shun-Bin
    Xie, Fu-Chen
    Liu, Xiao-Jun
    Xu, Ren-Ai
    Chen, Lixi
    Su, Zhilin
    FRONTIERS IN NEUROLOGY, 2021, 12
  • [22] Prognostic and Predictive Value of Immune-Related Gene Pair Signature in Primary Lower-Grade Glioma Patients
    Lei, Kunjian
    Li, Jingying
    Tu, Zewei
    Liu, Feng
    Ye, Minhua
    Wu, Miaojing
    Zhu, Yue
    Luo, Min
    Lin, Li
    Tao, Chuming
    Huang, Kai
    Zhu, Xingen
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [23] A Novel Six Autophagy-Related Genes Signature Associated With Outcomes and Immune Microenvironment in Lower-Grade Glioma
    Lin, Tao
    Cheng, Hao
    Liu, Da
    Wen, Lei
    Kang, Junlin
    Xu, Longwen
    Shan, Changguo
    Chen, Zhijie
    Li, Hainan
    Lai, Mingyao
    Zhou, Zhaoming
    Hong, Weiping
    Hu, Qingjun
    Li, Shaoqun
    Zhou, Cheng
    Geng, Jiwu
    Jin, Xin
    FRONTIERS IN GENETICS, 2021, 12
  • [24] Identification and validation of an autophagy-related signature for predicting survival in lower-grade glioma
    Feng, Shaobin
    Liu, Huiling
    Dong, Xushuai
    Du, Peng
    Guo, Hua
    Pang, Qi
    BIOENGINEERED, 2021, 12 (02) : 9692 - 9708
  • [25] Genomic instability in lower-grade glioma: Prediction of prognosis based on lncRNA and immune infiltration
    Kang, Kai
    Xie, Fucun
    Wu, Yijun
    Han, Chang
    Bai, Yi
    Long, Junyu
    Lian, Xin
    Zhang, Fuquan
    MOLECULAR THERAPY ONCOLYTICS, 2021, 22 : 431 - 443
  • [26] Identification and Validation of a Seizure-Free-Related Gene Signature for Predicting Poor Prognosis in Lower-Grade Gliomas
    Li, Jinxing
    Huan, Jing
    Yang, Fu
    Chen, Haixin
    Wang, Mingguang
    Heng, Xueyuan
    INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2021, 14 : 7399 - 7410
  • [27] Cuproptosis-related gene-located DNA methylation in lower-grade glioma: Prognosis and tumor microenvironment
    Zhu, Liucun
    Yuan, Fa
    Wang, Xue
    Zhu, Rui
    Guo, Wenna
    CANCER BIOMARKERS, 2024, 40 (02) : 185 - 198
  • [28] Hypoxia-Related lncRNA Correlates With Prognosis and Immune Microenvironment in Lower-Grade Glioma
    Xu, Shengchao
    Tang, Lu
    Liu, Zhixiong
    Luo, Chengke
    Cheng, Quan
    FRONTIERS IN IMMUNOLOGY, 2021, 12
  • [29] Identification of a Tumor Microenvironment-Related Eight-Gene Signature for Predicting Prognosis in Lower-Grade Gliomas
    Su, Jun
    Long, Wenyong
    Ma, Qianquan
    Xiao, Kai
    Li, Yang
    Xiao, Qun
    Peng, Gang
    Yuan, Jian
    Liu, Qing
    FRONTIERS IN GENETICS, 2019, 10
  • [30] A gene signature predicting prognosis of patients with lower-grade gliomas receiving temozolomide therapy
    Wan, Yanzhi
    Li, Guangqi
    Deng, Junyue
    Zhu, Hong
    Ma, Xuelei
    DISCOVER ONCOLOGY, 2023, 14 (01)