Unveiling the Potential of Migrasomes: A Machine-Learning-Driven Signature for Diagnosing Acute Myocardial Infarction

被引:0
作者
Zhu, Yihao [1 ,2 ]
Chen, Yuxi [1 ,2 ]
Xu, Jiajin [3 ]
Zu, Yao [1 ,2 ,4 ]
机构
[1] Shanghai Ocean Univ, Int Res Ctr Marine Biosci, Minist Sci & Technol, Shanghai 201306, Peoples R China
[2] Shanghai Ocean Univ, Key Lab Explorat & Utilizat Aquat Genet Resources, Minist Educ, Shanghai 201306, Peoples R China
[3] Jiangsu Univ, Sch Med, Dept Lab Med, Zhenjiang 212013, Peoples R China
[4] Marine Biomed Sci & Technol Innovat Platform Lin G, Shanghai 201306, Peoples R China
基金
中国国家自然科学基金;
关键词
migrasome; acute myocardial infarction; bioinformatics; machine learning; diagnosis; VASCULAR SMOOTH-MUSCLE; MACROPHAGES; EXPRESSION; MATURATION;
D O I
10.3390/biomedicines12071626
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Background: Recent studies have demonstrated that the migrasome, a newly functional extracellular vesicle, is potentially significant in the occurrence, progression, and diagnosis of cardiovascular diseases. Nonetheless, its diagnostic significance and biological mechanism in acute myocardial infarction (AMI) have yet to be fully explored. Methods: To remedy this gap, we employed an integrative machine learning (ML) framework composed of 113 ML combinations within five independent AMI cohorts to establish a predictive migrasome-related signature (MS). To further elucidate the biological mechanism underlying MS, we implemented single-cell RNA sequencing (scRNA-seq) of cardiac Cd45+ cells from AMI-induced mice. Ultimately, we conducted mendelian randomization (MR) and molecular docking to unveil the therapeutic effectiveness of MS. Results: MS demonstrated robust predictive performance and superior generalization, driven by the optimal combination of Stepglm and Lasso, on the expression of nine migrasome genes (BMP1, ITGB1, NDST1, TSPAN1, TSPAN18, TSPAN2, TSPAN4, TSPAN7, TSPAN9, and WNT8A). Notably, ITGB1 was found to be predominantly expressed in cardiac macrophages in AMI-induced mice, mechanically regulating macrophage transformation between anti-inflammatory and pro-inflammatory. Furthermore, we showed a positive causality between genetic predisposition towards ITGB1 expression and AMI risk, positioning it as a causative gene. Finally, we showed that ginsenoside Rh1, which interacts closely with ITGB1, could represent a novel therapeutic approach for repressing ITGB1. Conclusions: Our MS has implications in forecasting and curving AMI to inform future diagnostic and therapeutic strategies for AMI.
引用
收藏
页数:20
相关论文
共 73 条
  • [1] Heparan sulfate Ndst1 regulates vascular smooth muscle cell proliferation, vessel size and vascular remodeling
    Adhikari, Neeta
    Basi, David L.
    Townsend, DeWayne
    Rusch, Melissa
    Mariash, Ami
    Mullegama, Sureni
    Watson, Adrienne
    Larson, Jon
    Tan, Sara
    Lerman, Ben
    Esko, Jeffrey D.
    Selleck, Scott B.
    Hall, Jennifer L.
    [J]. JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY, 2010, 49 (02) : 287 - 293
  • [2] N-Glycans on EGF domain-specificO-GlcNAc transferase (EOGT) facilitate EOGT maturation and peripheral endoplasmic reticulum localization
    Alam, Sayad Md. Didarul
    Tsukamoto, Yohei
    Ogawa, Mitsutaka
    Senoo, Yuya
    Ikeda, Kazutaka
    Tashima, Yuko
    Takeuchi, Hideyuki
    Okajima, Tetsuya
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2020, 295 (25) : 8560 - 8574
  • [3] Microarray data analysis: from disarray to consolidation and consensus
    Allison, DB
    Cui, XQ
    Page, GP
    Sabripour, M
    [J]. NATURE REVIEWS GENETICS, 2006, 7 (01) : 55 - 65
  • [4] The single-cell transcriptional landscape of mammalian organogenesis
    Cao, Junyue
    Spielmann, Malte
    Qiu, Xiaojie
    Huang, Xingfan
    Ibrahim, Daniel M.
    Hill, Andrew J.
    Zhang, Fan
    Mundlos, Stefan
    Christiansen, Lena
    Steemers, Frank J.
    Trapnell, Cole
    Shendure, Jay
    [J]. NATURE, 2019, 566 (7745) : 496 - +
  • [5] Identification of potential drug targets for rheumatoid arthritis from genetic insights: a Mendelian randomization study
    Cao, Yu
    Yang, Ying
    Hu, Qingfeng
    Wei, Guojun
    [J]. JOURNAL OF TRANSLATIONAL MEDICINE, 2023, 21 (01)
  • [6] Clough E, 2016, METHODS MOL BIOL, V1418, P93, DOI 10.1007/978-1-4939-3578-9_5
  • [7] Troponin I as a Biomarker for Early Detection of Acute Myocardial Infarction
    Duque-Ossa, L. C.
    Garcia-Ferrera, B.
    Reyes-Retana, J. A.
    [J]. CURRENT PROBLEMS IN CARDIOLOGY, 2023, 48 (05)
  • [8] Transforming growth factor-β in myocardial disease
    Frangogiannis, Nikolaos G.
    [J]. NATURE REVIEWS CARDIOLOGY, 2022, 19 (07) : 435 - 455
  • [9] TSPAN1, a novel tetraspanin member highly involved in carcinogenesis and chemoresistance
    Garcia-Mayea, Yoelsis
    Mir, Cristina
    Carballo, Laia
    Sanchez-Garcia, Almudena
    Bataller, Marina
    LLeonart, Matilde E. E.
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 2022, 1877 (01):
  • [10] Tspan18 is a novel regulator of thrombo-inflammation
    Gavin, Rebecca L.
    Koo, Chek Ziu
    Tomlinson, Michael G.
    [J]. MEDICAL MICROBIOLOGY AND IMMUNOLOGY, 2020, 209 (04) : 553 - 564