Study on the anti-HBV activity of matrine alkaloids from Oxytropis ochrocephala by MTT, 3d-QSAR, molecular docking and molecular dynamics simulation

被引:1
|
作者
Zhang, Ya-Kun [1 ,2 ]
Tong, Jian-Bo [2 ]
Tan, Jing [1 ]
Yang, Min [1 ]
Xing, Xiao-Yu [2 ]
Zeng, Yan-Rong [1 ]
Xue, Zhan [1 ,3 ]
Tan, Cheng-Jian [1 ]
机构
[1] Guizhou Minzu Univ, Sch Chinese Ethn Med, Guiyang 550025, Peoples R China
[2] Shaanxi Univ Sci & Technol, Coll Chem & Chem Engn, Xian 710021, Peoples R China
[3] Guizhou Univ Engn Sci, Coll Chem Engn, Bijie 551700, Peoples R China
基金
中国国家自然科学基金;
关键词
Oxytropis ochrocephala; HBV; MTT; 3D-QSAR; molecular docking; molecular dynamics simulation; HEPATITIS-B TREATMENT; DERIVATIVES; INHIBITORS; ACID;
D O I
10.1080/10286020.2024.2402369
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
To elucidate the structure-activity relationship of 17 matrine alkaloids from Oxytropis ochrocephala Bunge, their effect on hepatitis B surface antigen (HBsAg) secretion was studied using the MTT assay. A 3D-QSAR analysis showed a strong correlation between chemical structures and biological activities (q(2) = 0.625, r(2) = 0.859). Molecular docking and molecular dynamics simulations revealed that hydrogen bonding and hydrophobic interactions with hepatitis B core protein (PDB:5T2P) are key to inhibiting HBsAg secretion, suggesting potential for developing natural anti-hepatitis B drugs.
引用
收藏
页码:442 / 459
页数:18
相关论文
共 50 条
  • [1] Study on β-glucosidase activators by 3D-QSAR, molecular docking and molecular dynamics simulation
    Jiang, Guilan
    Li, Silin
    Zhu, Jingyi
    Li, Binbin
    Ding, Zhuhong
    JOURNAL OF MOLECULAR LIQUIDS, 2024, 404
  • [2] Study on the interactions of pyrimidine derivatives with FAK by 3D-QSAR, molecular docking and molecular dynamics simulation
    Sun, Chuan-ce
    Feng, Li-jun
    Sun, Xiao-hua
    Yu, Ri-lei
    Chu, Yan-yan
    Kang, Cong-min
    NEW JOURNAL OF CHEMISTRY, 2020, 44 (45) : 19499 - 19507
  • [3] Sesquiterpenoids from aged Artemisia argyi and their 3D-QSAR for anti-HBV activity
    Song, Yu-Ying
    Zhou, Yong-Zhi
    Wang, Yun-Fen
    Shu, Teng-Yun
    Feng, Yang
    Xu, Min
    Su, Li-Hua
    Li, Hai-Zhou
    PHYTOCHEMISTRY, 2024, 217
  • [4] Molecular engineering and activity improvement of acetylcholinesterase inhibitors: Insights from 3D-QSAR, docking, and molecular dynamics simulation studies
    Gao, Wenqi
    Ma, Xiaohong
    Yang, Huijuan
    Luan, Yuxia
    Ai, Hongqi
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2022, 116
  • [5] 3D-QSAR, Molecular Docking and Molecular Dynamics Simulation of Pseudomonas aeruginosa LpxC Inhibitors
    Zuo, Ke
    Liang, Li
    Du, Wenyi
    Sun, Xin
    Liu, Wei
    Gou, Xiaojun
    Wan, Hua
    Hu, Jianping
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2017, 18 (05)
  • [6] Study on indole CB2 ligands based on 3D-QSAR, molecular docking and molecular dynamics simulation
    Li, Jiaojiao
    Shen, Jiacheng
    Li, Xinxin
    Qin, Zheng
    Jiang, Zheng
    Sun, Shengxin
    Li, Zhengfu
    JOURNAL OF THE INDIAN CHEMICAL SOCIETY, 2024, 101 (12)
  • [7] Studies on the antibacterial activities and molecular mechanism of GyrB inhibitors by 3D-QSAR, molecular docking and molecular dynamics simulation
    Wang, Fangfang
    Yang, Wei
    Zhou, Bo
    ARABIAN JOURNAL OF CHEMISTRY, 2022, 15 (06)
  • [8] Discovery of novel tubulin polymerization inhibitors by utilizing 3D-QSAR, molecular docking and molecular dynamics simulation
    Zhao, Xuemin
    Zhang, Rui
    Yu, Xiuyan
    Yu, Na
    Shi, Yuanze
    Shu, Mao
    Shen, Yan
    NEW JOURNAL OF CHEMISTRY, 2022, 46 (34) : 16426 - 16435
  • [9] Discovery of promising FtsZ inhibitors by E-pharmacophore, 3D-QSAR, molecular docking study, and molecular dynamics simulation
    Qiu, Yaping
    Zhou, Lu
    Hu, Yanqiu
    Bao, Yinfeng
    JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, 2019, 39 (02) : 154 - 166
  • [10] Molecular docking, molecular dynamics simulation, and structure-based 3D-QSAR studies on estrogenic activity of hydroxylated polychlorinated biphenyls
    Li, Xiaolin
    Ye, Li
    Wang, Xiaoxiang
    Wang, Xinzhou
    Liu, Hongling
    Qian, Xiangping
    Zhu, Yongliang
    Yu, Hongxia
    SCIENCE OF THE TOTAL ENVIRONMENT, 2012, 441 : 230 - 238