Multi-layered computational gene networks by engineered tristate logics

被引:7
|
作者
Shao, Jiawei [1 ,2 ,3 ,4 ,5 ,6 ]
Qiu, Xinyuan [7 ,12 ]
Zhang, Lihang [3 ,4 ,5 ,6 ,8 ]
Li, Shichao [3 ,4 ,5 ,6 ,10 ]
Xue, Shuai [5 ]
Si, Yaqing [3 ,4 ,5 ,6 ,11 ]
Li, Yilin [3 ,4 ,5 ,6 ,10 ]
Jiang, Jian [3 ,4 ,5 ,6 ,11 ]
Wu, Yuhang [3 ,4 ,5 ,6 ,11 ]
Xiong, Qiqi [3 ,4 ,5 ,6 ,11 ]
Wang, Yukai [5 ,9 ,11 ]
Chen, Qidi [1 ,2 ]
Gao, Ting [3 ,4 ,5 ,6 ]
Zhu, Lingyun [7 ]
Wang, Hui [8 ]
Xie, Mingqi [3 ,4 ,5 ,6 ,9 ]
机构
[1] Zhejiang Univ, Affiliated Hosp 4, Ctr Regenerat & Aging Med, Int Inst Med,Dept Pharm,Sch Med, Yiwu 322000, Zhejiang, Peoples R China
[2] Zhejiang Univ, Affiliated Hosp 4, Ctr Regenerat & Aging Med, Int Inst Med,Dept Pharm,Int Sch Med, Yiwu 322000, Zhejiang, Peoples R China
[3] Westlake Univ, Sch Med, Key Lab Growth Regulat & Translat Res Zhejiang Pro, Hangzhou 310024, Zhejiang, Peoples R China
[4] Westlake Univ, Sch Life Sci, Key Lab Growth Regulat & Translat Res Zhejiang Pro, Hangzhou 310024, Zhejiang, Peoples R China
[5] Westlake Lab Life Sci & Biomed, Hangzhou 310024, Zhejiang, Peoples R China
[6] Westlake Inst Adv Study, Inst Basic Med Sci, Hangzhou 310024, Zhejiang, Peoples R China
[7] Natl Univ Def Technol, Coll Sci, Dept Biol & Chem, Changsha 410073, Hunan, Peoples R China
[8] Zhejiang Lab, Res Ctr Life Sci Comp, Hangzhou 311100, Zhejiang, Peoples R China
[9] Westlake Univ, Sch Engn, Hangzhou 310030, Zhejiang, Peoples R China
[10] Zhejiang Univ, Coll Life Sci, Hangzhou 310058, Zhejiang, Peoples R China
[11] Fudan Univ, Sch Life Sci, Shanghai 200433, Peoples R China
[12] Natl Univ Def Technol, Coll Comp Sci & Technol, Changsha 410073, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
CIRCUITS; CELLS; IDENTIFICATION; DOMAINS; BINDING; DESIGN;
D O I
10.1016/j.cell.2024.07.001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
So far, biocomputation strictly follows traditional design principles of digital electronics, which could reach their limits when assembling gene circuits of higher complexity. Here, by creating genetic variants of tristate buffers instead of using conventional logic gates as basic signal processing units, we introduce a tristatebased logic synthesis (TriLoS) framework for resource-efficient design of multi-layered gene networks capable of performing complex Boolean calculus within single-cell populations. This sets the stage for simple, modular, and low-interference mapping of various arithmetic logics of interest and an effectively enlarged engineering space within single cells. We not only construct computational gene networks running full adder and full subtractor operations at a cellular level but also describe a treatment paradigm building on programmable cell-based therapeutics, allowing for adjustable and disease-specific drug secretion logics in vivo. This work could foster the evolution of modern biocomputers to progress toward unexplored applications in precision medicine.
引用
收藏
页数:32
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