Genome-Wide Analysis of the Nramp Gene Family in Kenaf (Hibiscus cannabinus): Identification, Expression Analysis, and Response to Cadmium Stress

被引:0
作者
Liu, Qin [1 ,2 ]
Li, Shaocui [2 ]
Du, Guanghui [1 ]
An, Xia [2 ]
机构
[1] Yunnan Univ, Sch Agr, Kunming 650500, Peoples R China
[2] Zhejiang Acad Agr Sci, Zhejiang Xiaoshan Inst Cotton & Bast Fiber Crops, Zhejiang Inst Landscape Plants & Flowers, Hangzhou 311251, Peoples R China
来源
PLANTS-BASEL | 2024年 / 13卷 / 17期
关键词
Hibiscus cannabinus; Nramp gene family; cadmium; phylogenetic analysis; ARABIDOPSIS; TRANSPORT; CD;
D O I
10.3390/plants13172514
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Kenaf (Hibiscus cannabinu) is a grass bast fiber crop that has the ability to tolerate and accumulate heavy metals, and it has been considered as a potential heavy metal accumulator and remediation plant. Nramp is a natural resistance-related macrophage, which plays an important role in the transport of divalent metal ions, plant growth and development, and abiotic stress. In this study, the Nramp gene family of kenaf was analyzed at the whole genome level. A total of 15 HcNramp genes were identified. They are distributed unevenly on chromosomes. Phylogenetic analysis classified 15 HcNramp proteins into 3 different subfamilies. All proteins share specific motif 4 and motif 6, and the genes belonging to the same subfamily are similar in structure and motif. The promoters are rich in hormone response, meristem expression, and environmental stress response elements. Under different treatments, the expression levels of HcNramp genes vary in different tissues, and most of them are expressed in roots first. These findings can provide a basis for understanding the potential role of the Nramp gene family in kenaf in response to cadmium (Cd) stress, and are of great significance for screening related Cd tolerance genes in kenaf.
引用
收藏
页数:19
相关论文
共 50 条
[1]   Transcriptomic and Metabolic Profiling of Kenaf Stems under Salinity Stress [J].
An, Xia ;
Chen, Jie ;
Liu, Tingting ;
Li, Wenlue ;
Luo, Xiahong ;
Zou, Lina .
PLANTS-BASEL, 2022, 11 (11)
[2]   Research Progress on Tissue Culture and Genetic Transformation of Kenaf (Hibiscus cannabinus) [J].
An, Xia ;
Jin, Guanrong ;
Zhang, Jingyu ;
Ma, GuangYing ;
Dai, Lunjin ;
Jin, Liang ;
Luo, Xiahong ;
Chen, Changli ;
Shi, Xiaohua ;
Zhou, Jun ;
Wei, Wei ;
Li, Wenlue ;
Chen, Cong ;
Deng, Gang ;
Zhu, Guanlin .
OPEN LIFE SCIENCES, 2017, 12 (01) :465-472
[3]   High-Affinity Manganese Uptake by the Metal Transporter NRAMP1 Is Essential for Arabidopsis Growth in Low Manganese Conditions [J].
Cailliatte, Remy ;
Schikora, Adam ;
Briat, Jean-Francois ;
Mari, Stephane ;
Curie, Catherine .
PLANT CELL, 2010, 22 (03) :904-917
[4]   The NRAMP6 metal transporter contributes to cadmium toxicity [J].
Cailliatte, Remy ;
Lapeyre, Bruno ;
Briat, Jean-Francois ;
Mari, Stephane ;
Curie, Catherine .
BIOCHEMICAL JOURNAL, 2009, 422 :217-228
[5]   TBtools-II: A "one for all, all for one"bioinformatics platform for biological big-data mining [J].
Chen, Chengjie ;
Wu, Ya ;
Li, Jiawei ;
Wang, Xiao ;
Zeng, Zaohai ;
Xu, Jing ;
Liu, Yuanlong ;
Feng, Junting ;
Chen, Hao ;
He, Yehua ;
Xia, Rui .
MOLECULAR PLANT, 2023, 16 (11) :1733-1742
[6]   TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data [J].
Chen, Chengjie ;
Chen, Hao ;
Zhang, Yi ;
Thomas, Hannah R. ;
Frank, Margaret H. ;
He, Yehua ;
Xia, Rui .
MOLECULAR PLANT, 2020, 13 (08) :1194-1202
[7]  
[陈可欣 Chen Kexin], 2020, [植物生理学报, Plant Physiology Journal], V56, P345
[8]   Genomic insights of the WRKY genes in kenaf (Hibiscus cannabinus L.) reveal that HcWRKY44 improves the plant's tolerance to the salinity stress [J].
Chen, Meixia ;
She, Zeyuan ;
Aslam, Mohammad ;
Liu, Ting ;
Wang, Zerong ;
Qi, Jianmin ;
Niu, Xiaoping .
FRONTIERS IN PLANT SCIENCE, 2022, 13
[9]   Transcriptome analysis revealed key genes and pathways related to cadmium-stress tolerance in Kenaf (Hibiscus cannabinus L.) [J].
Chen, Peng ;
Chen, Tao ;
Li, Zengqiang ;
Jia, Ruixing ;
Luo, Dengjie ;
Tang, Meiqiong ;
Lu, Hai ;
Hu, Yali ;
Yue, Jiao ;
Huang, Zhen .
INDUSTRIAL CROPS AND PRODUCTS, 2020, 158 (158)
[10]   Comparative transcriptomic analysis reveals key genes and pathways in two different cadmium tolerance kenaf (Hibiscus cannabinus L.) cultivars [J].
Chen, Peng ;
Li, Zengqiang ;
Luo, Dengjie ;
Jia, Ruixing ;
Lu, Hai ;
Tang, Meiqiong ;
Hu, Yali ;
Yue, Jiao ;
Huang, Zhen .
CHEMOSPHERE, 2021, 263