Bayesian group testing regression models for spatial data

被引:0
作者
Huang, Rongjie [1 ]
McLain, Alexander C. [1 ]
Herrin, Brian H. [2 ]
Nolan, Melissa [1 ]
Cai, Bo [1 ]
Self, Stella [1 ]
机构
[1] Univ South Carolina, Dept Epidemiol & Biostat, 915 Greene St, Columbia, SC 29208 USA
[2] Kansas State Univ, Coll Vet Med, 1700 Denison Ave, Manhattan, KS 66502 USA
基金
美国国家卫生研究院;
关键词
Group testing; Generalized linear mixed effects spatial; regression; Conditional autoregressive prior; Gaussian predictive process; PREVALENCE; DILUTION; DISEASE; POOLS;
D O I
10.1016/j.sste.2024.100677
中图分类号
R1 [预防医学、卫生学];
学科分类号
1004 ; 120402 ;
摘要
Spatial patterns are common in infectious disease epidemiology. Disease mapping is essential to infectious disease surveillance. Under a group testing protocol, biomaterial from multiple individuals is physically combined into a pooled specimen, which is then tested for infection. If the pool tests negative, all contributing individuals are generally assumed to be uninfected. If the pool tests positive, the individuals are usually retested to determine who is infected. When the prevalence of infection is low, group testing provides significant cost savings over traditional individual testing by reducing the number of tests required. However, the lack of statistical methods capable of producing maps from group testing data has limited the use of group testing in disease mapping. We develop a Bayesian methodology that can simultaneously map disease prevalence using group testing data and identify risk factors for infection. We illustrate its real-world utility using two datasets from vector-borne disease surveillance.
引用
收藏
页数:15
相关论文
共 30 条
[1]  
[Anonymous], 2024, West Nile Virus (WNV) mosquito test results
[2]   Stationary process approximation for the analysis of large spatial datasets [J].
Banerjee, Sudipto ;
Gelfand, Alan E. ;
Finley, Andrew O. ;
Sang, Huiyan .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 2008, 70 :825-848
[3]  
BESAG J, 1974, J ROY STAT SOC B MET, V36, P192
[4]  
Centers for Disease Control and Prevention, 2024, West Nile Virus: Symptoms, diagnosis and treatment
[5]  
Centers for Disease Control and Prevention, 2024, Other spotted fever group rickettsioses: Treatment
[6]  
Centers for Disease Control and Prevention, 2024, West Nile Virus Historic Data
[7]   Group Testing Regression Models with Fixed and Random Effects [J].
Chen, Peng ;
Tebbs, Joshua M. ;
Bilder, Christopher R. .
BIOMETRICS, 2009, 65 (04) :1270-1278
[8]   How priors of initial hyperparameters affect Gaussian process regression models [J].
Chen, Zexun ;
Wang, Bo .
NEUROCOMPUTING, 2018, 275 :1702-1710
[9]   Nonparametric methods for group testing data, taking dilution into account [J].
Delaigle, A. ;
Hall, P. .
BIOMETRIKA, 2015, 102 (04) :871-887
[10]   New approaches to nonparametric and semiparametric regression for univariate and multivariate group testing data [J].
Delaigle, A. ;
Hall, P. ;
Wishart, J. R. .
BIOMETRIKA, 2014, 101 (03) :567-585