Machine learning models based on fluid immunoproteins that predict non-AIDS adverse events in people with HIV

被引:2
作者
Premeaux, Thomas A. [1 ]
Bowler, Scott [1 ]
Friday, Courtney M. [1 ]
Moser, Carlee B. [2 ]
Hoenigl, Martin [3 ,4 ]
Lederman, Michael M. [5 ]
Landay, Alan L. [6 ]
Gianella, Sara
Ndhlovu, Lishomwa C. [1 ]
机构
[1] Weill Cornell Med, Dept Med, Div Infect Dis, New York, NY 10065 USA
[2] Harvard TH Chan Sch Publ Hlth, Dept Biostat, Ctr Biostat AIDS Res, Boston, MA USA
[3] Univ Calif San Diego, Dept Med, Div Infect Dis, San Diego, CA USA
[4] Med Univ Graz, Dept Internal Med, Div Infect Dis, Graz, Austria
[5] Case Western Reserve Univ, Dept Med, Div Infect Dis & HIV Med, Cleveland, OH USA
[6] Rush Univ, Med Ctr, Dept Internal Med, Chicago, IL USA
基金
美国国家卫生研究院;
关键词
non-AIDS event; Support vector; AGE-RELATED-CHANGES; ANTIRETROVIRAL THERAPY; CELL BIOLOGY; RISK; INFLAMMATION; INITIATION; COMORBIDITIES; INFECTION; HEALTH; CANCER;
D O I
10.1016/j.isci.2024.109945
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Despite the success of antiretroviral therapy (ART), individuals with HIV remain at risk for experiencing non-AIDS adverse events (NAEs), including cardiovascular complications and malignancy. Several surrogate immune biomarkers in blood have shown predictive value in predicting NAEs; however, composite panels generated using machine learning may provide a more accurate advancement for monitoring and discriminating NAEs. In a nested case-control study, we aimed to develop machine learning models to discriminate cases (experienced an event) and matched controls using demographic and clinical characteristics alongside 49 plasma immunoproteins measured prior to and post-ART initiation. We generated support vector machine (SVM) classifier models for high-accuracy discrimination of individuals aged 30-50 years who experienced non-fatal NAEs at pre-ART and one-year post-ART. Extreme gradient boosting generated a high-accuracy model at pre-ART, while K-nearest neighbors performed poorly all around. SVM modeling may offer guidance to improve disease monitoring and elucidate potential therapeutic interventions.
引用
收藏
页数:16
相关论文
共 65 条
  • [1] [Anonymous], 2018, HIV SURV REP, V30
  • [2] Systemic Inflammation, Coagulation, and Clinical Risk in the START Trial
    Baker, Jason V.
    Sharma, Shweta
    Grund, Birgit
    Rupert, Adam
    Metcalf, Julia A.
    Schechter, Mauro
    Munderi, Paula
    Aho, Inka
    Emery, Sean
    Babiker, Abdel
    Phillips, Andrew
    Lundgren, Jens D.
    Neaton, James D.
    Lane, H. Clifford
    [J]. OPEN FORUM INFECTIOUS DISEASES, 2017, 4 (04):
  • [3] Higher Levels of CRP, D-dimer, IL-6, and Hyaluronic Acid Before Initiation of Antiretroviral Therapy (ART) Are Associated With Increased Risk of AIDS or Death
    Boulware, David R.
    Hullsiek, Katherine Huppler
    Puronen, Camille E.
    Rupert, Adam
    Baker, Jason V.
    French, Martyn A.
    Bohjanen, Paul R.
    Novak, Richard M.
    Neaton, James D.
    Sereti, Irini
    [J]. JOURNAL OF INFECTIOUS DISEASES, 2011, 203 (11) : 1637 - 1646
  • [4] A machine learning approach utilizing DNA methylation as an accurate classifier of COVID-19 disease severity
    Bowler, Scott
    Papoutsoglou, Georgios
    Karanikas, Aristides
    Tsamardinos, Ioannis
    Corley, Michael J.
    Ndhlovu, Lishomwa C.
    [J]. SCIENTIFIC REPORTS, 2022, 12 (01)
  • [5] Soluble immune checkpoints as correlates for HIV persistence and T cell function in people with HIV on antiretroviral therapy
    Chiu, Chris Y. Y.
    Schou, Maya D. D.
    McMahon, James H. H.
    Deeks, Steven G. G.
    Fromentin, Remi
    Chomont, Nicolas
    Wykes, Michelle N. N.
    Rasmussen, Thomas A. A.
    Lewin, Sharon R. R.
    [J]. FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [6] DNAM-1 Activating Receptor and Its Ligands: How Do Viruses Affect the NK Cell-Mediated Immune Surveillance during the Various Phases of Infection?
    Cifaldi, Loredana
    Doria, Margherita
    Cotugno, Nicola
    Zicari, Sonia
    Cancrini, Caterina
    Palma, Paolo
    Rossi, Paolo
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 20 (15)
  • [7] Siglecs and their roles in the immune system
    Crocker, Paul R.
    Paulson, James C.
    Varki, Ajit
    [J]. NATURE REVIEWS IMMUNOLOGY, 2007, 7 (04) : 255 - 266
  • [8] The significance of OX40 and OX40L to T-cell biology and immune disease
    Croft, Michael
    So, Takanori
    Duan, Wei
    Soroosh, Pejman
    [J]. IMMUNOLOGICAL REVIEWS, 2009, 229 : 173 - 191
  • [9] Systemic Effects of Inflammation on Health during Chronic HIV Infection
    Deeks, Steven G.
    Tracy, Russell
    Douek, Daniel C.
    [J]. IMMUNITY, 2013, 39 (04) : 633 - 645
  • [10] HIV Infection, Inflammation, Immunosenescence, and Aging
    Deeks, Steven G.
    [J]. ANNUAL REVIEW OF MEDICINE, VOL 62, 2011, 2011, 62 : 141 - 155