lwreg: A Lightweight System for Chemical Registration and Data Storage

被引:0
作者
Landrum, Gregory A. [1 ]
Braun, Jessica [1 ]
Katzberger, Paul [1 ]
Lehner, Marc T. [1 ]
Riniker, Sereina [1 ]
机构
[1] Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-8093 Zurich, Switzerland
关键词
Compendex;
D O I
10.1021/acs.jcim.4c01133
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Here, we present lwreg, a lightweight, yet flexible chemical registration system supporting the capture of both two-dimensional molecular structures (topologies) and three-dimensional conformers. lwreg is open source, with a simple Python API, and is designed to be easily integrated into computational workflows. In addition to lwreg itself, we also introduce a straightforward schema for storing experimental data and metadata in the registration database. This direct connection between compound structural information and data generated using those structures creates a powerful tool for data analysis and experimental reproducibility. The software is available at and installable directly from https://github.com/rinikerlab/lightweight-registration.
引用
收藏
页码:6247 / 6252
页数:6
相关论文
共 10 条
  • [1] GAULTON A, 2012, NUCL ACIDS RES, V0040
  • [2] Heller, 2011, IUPAC INT CHEM IDENT
  • [3] InChI, the IUPAC International Chemical Identifier
    Heller, Stephen R.
    McNaught, Alan
    Pletnev, Igor
    Stein, Stephen
    Tchekhovskoi, Dmitrii
    [J]. JOURNAL OF CHEMINFORMATICS, 2015, 7
  • [4] Landrum G. A., 2015, KEY REGISTRATION
  • [5] SIMPD: an algorithm for generating simulated time splits for validating machine learning approaches
    Landrum, Gregory A.
    Beckers, Maximilian
    Lanini, Jessica
    Schneider, Nadine
    Stiefl, Nikolaus
    Riniker, Sereina
    [J]. JOURNAL OF CHEMINFORMATICS, 2023, 15 (01)
  • [6] DASH: Dynamic Attention-Based Substructure Hierarchy for Partial Charge Assignment
    Lehner, Marc T.
    Katzberger, Paul
    Maeder, Niels
    Schiebroek, Carl C. G.
    Teetz, Jakob
    Landrum, Gregory A.
    Riniker, Sereina
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2023, 63 (19) : 6014 - 6028
  • [7] Nealschneider D., 2022, WHY REGISTRATIONHASH
  • [8] OBoyle N., 2019, ADVANTAGE SELECTIVEL
  • [9] Rdkit, Open-source cheminformatics
  • [10] Vianello R., CHEMICALITE SQLITE D