Novel Z-DNA binding domains in giant viruses

被引:1
作者
Romero, Miguel F. [1 ]
Krall, Jeffrey B. [2 ]
Nichols, Parker J. [2 ]
Vantreeck, Jillian [2 ]
Henen, Morkos A. [2 ]
Dejardin, Emmanuel [3 ]
Schulz, Frederik [1 ]
Vicens, Quentin [4 ]
Vogeli, Beat [2 ]
Diallo, Mamadou Amadou [3 ]
机构
[1] Lawrence Berkeley Natl Lab, DOE Joint Genome Inst, Berkeley, CA 94720 USA
[2] Univ Colorado Denver, Dept Biochem & Mol Genet, Aurora, CO 80045 USA
[3] Univ Liege, GIGA I3 Mol Immunol & Signal Transduct, Liege, Belgium
[4] Univ Houston, Ctr Nucl Receptors & Cell Signaling, Dept Biol & Biochem, Houston, TX 77004 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
Z-ALPHA DOMAIN; CRYSTAL-STRUCTURE; Z-RNA; COMPLEX REVEALS; PROTEIN; RECOGNITION; DSRNA; SEARCH; KINASE; FAMILY;
D O I
10.1016/j.jbc.2024.107504
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Z-nucleic acid structures play vital roles in cellular processes and have implications in innate immunity due to their recognition by Za a domains containing proteins (Z-DNA/Z-RNA binding proteins, ZBPs). Although Za a domains have been identified fi ed in six proteins, including viral E3L, ORF112, and I73R, as well as, cellular ADAR1, ZBP1, and PKZ, their prevalence across living organisms remains largely unexplored. In this study, we introduce a computational approach to predict Za a domains, leading to the revelation of previously unidentifi ed Za a domain-containing proteins in eukaryotic organisms, including non-metazoan species. Our fi ndings encompass the discovery of new ZBPs in previously unexplored giant viruses, members of the Nucleocytoviricota phylum. Through experimental validation, we confirm fi rm the Za a functionality of select proteins, establishing their capability to induce the B-to-Z conversion. Additionally, we identify Za-like a-like domains within bacterial proteins. While these domains share certain features with Za a domains, they lack the ability to bind to Z-nucleic acids or facilitate the B-to-Z DNA conversion. Our fi ndings significantly fi cantly expand the ZBP family across a wide spectrum of organisms and raise intriguing questions about the evolutionary origins of Za-containing a-containing proteins. Moreover, our study offers fresh perspectives on the functional significance fi cance of Za a domains in virus sensing and innate immunity and opens avenues for exploring hitherto undiscovered functions of ZBPs.
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页数:10
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