Identification of Pyroptosis-Related Molecular Subtypes and Diagnostic Model development in Major Depressive Disorder

被引:0
作者
Feng, Lin [1 ,2 ]
Yuan, Jiabo [3 ]
Li, Li [1 ]
Tang, Junze [1 ]
机构
[1] Harbin Sport Univ, Harbin, Heilongjiang, Peoples R China
[2] Heilongjiang Univ Chinese Med, Affiliated Hosp 2, Harbin, Heilongjiang, Peoples R China
[3] Heilongjiang Univ Chinese Med, Affiliated Hosp 1, Harbin, Heilongjiang, Peoples R China
关键词
Major depressive disorder; Pyroptosis; Inflammation; Gene; Immune infiltration; STEROIDOGENIC ENZYME AKR1C3; METAANALYSIS; ACTIVATION; CYTOKINES; PACKAGE; NLRC4;
D O I
10.1007/s12033-024-01252-0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Major depressive disorder (MDD) is a prevalent psychological disorder associated with inflammation, with complex pathological mechanisms. Pyroptosis has been suggested to contribute to inflammation in central nervous system diseases. Little research, however, has examined what role pyroptosis played in MDD. In the present study, the differential expression pyroptosis-related genes (DE-PRGs) in MDD were identified from the GEO database (GSE98793 and GSE19738). Then, consensus clustering analysis was used to evaluate differences in MDD molecular subtypes characteristics based on PRGs. The characteristic diagnostic biomarkers for MDD were identified by Weighted Correlation Network Analysis (WGCNA) and multiple machine learning algorithms. Three intersection genes (GZMA, AKR1C3, and CD52) were obtained, which are expected to become potential biomarkers for MDD with excellent reliability and accuracy. Subsequently, the immune infiltration characteristics result indicated that the development of MDD is mediated by immune-related function, where three DE-PRGs were strongly related to the immune infiltration landscape of MDD. The biological experiments in vitro further proved that three unique PRGs are emerging as important players in MDD diagnosis. Our research aimed to provide novel ideas and biomarkers targeting MDD.
引用
收藏
页数:15
相关论文
共 57 条
[1]   A CHANGE OF MIND [J].
Anthes, Emily .
NATURE, 2014, 515 (7526) :185-187
[2]   An activating NLRC4 inflammasome mutation causes autoinflammation with recurrent macrophage activation syndrome [J].
Canna, Scott W. ;
de Jesus, Adriana A. ;
Gounil, Sushanth ;
Brooks, Stephen R. ;
Marrero, Bernadette ;
Liu, Yin ;
DiMattia, Michael A. ;
Zaal, Kristien J. M. ;
Sanchez, Gina A. Montealegre ;
Kim, Hanna ;
Chapelle, Dawn ;
Plass, Nicole ;
Huang, Yan ;
Villarinol, Alejandro V. ;
Biancotto, Angelique ;
Fleisher, Thomas A. ;
Duncan, Joseph A. ;
O'Shea, John J. ;
Benseler, Susanne ;
Grom, Alexei ;
Deng, Zuoming ;
Laxer, Ronald M. ;
Goldbach-Mansky, Raphaela .
NATURE GENETICS, 2014, 46 (10) :1140-1146
[3]  
Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12
[4]   Ferroptosis-related genes as diagnostic markers for major depressive disorder and their correlations with immune infiltration [J].
Chen, Jingjing ;
Jiang, Xiaolong ;
Gao, Xin ;
Wu, Wen ;
Gu, Zhengsheng ;
Yin, Ge ;
Sun, Rui ;
Li, Jiasi ;
Wang, Ruoru ;
Zhang, Hailing ;
Du, Bingying ;
Bi, Xiaoying .
FRONTIERS IN MEDICINE, 2023, 10
[5]   Celastrol inhibits microglial pyroptosis and attenuates inflammatory reaction in acute spinal cord injury rats [J].
Dai, Wangying ;
Wang, Xingguo ;
Teng, Honglin ;
Li, Chi ;
Wang, Bin ;
Wang, Jing .
INTERNATIONAL IMMUNOPHARMACOLOGY, 2019, 66 :215-223
[6]   The Pyroptosis-Related Signature Predicts Diagnosis and Indicates Immune Characteristic in Major Depressive Disorder [J].
Deng, Zhifang ;
Liu, Jue ;
He, Shen ;
Gao, Wenqi .
FRONTIERS IN PHARMACOLOGY, 2022, 13
[7]   A Meta-Analysis of Cytokines in Major Depression [J].
Dowlati, Yekta ;
Herrmann, Nathan ;
Swardfager, Walter ;
Liu, Helena ;
Sham, Lauren ;
Reim, Elyse K. ;
Lanctot, Krista L. .
BIOLOGICAL PSYCHIATRY, 2010, 67 (05) :446-457
[8]   The Steroidogenic Enzyme AKR1C3 Regulates Stability of the Ubiquitin Ligase Siah2 in Prostate Cancer Cells [J].
Fan, Lingling ;
Peng, Guihong ;
Hussain, Arif ;
Fazli, Ladan ;
Guns, Emma ;
Gleave, Martin ;
Qi, Jianfei .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2015, 290 (34) :20865-20879
[9]   Effect of Continuing Olanzapine vs Placebo on Relapse Among Patients With Psychotic Depression in Remission The STOP-PD II Randomized Clinical Trial [J].
Flint, Alastair J. ;
Meyers, Barnett S. ;
Rothschild, Anthony J. ;
Whyte, Ellen M. ;
Alexopoulos, George S. ;
Rudorfer, Matthew V. ;
Marino, Patricia ;
Banerjee, Samprit ;
Pollari, Cristina D. ;
Wu, Yiyuan ;
Voineskos, Aristotle N. ;
Mulsant, Benoit H. ;
Mulsant, Benoit ;
Kennedy, James ;
Pollock, Bruce ;
Voineskos, Aristotle ;
Rudorfer, Matthew ;
Flint, Alastair ;
Giacobbe, Peter ;
Swampillai, Brenda ;
Rothschild, Anthony ;
Deligiannidis, Kristina ;
Kosma, Chelsea ;
Marsh, Wendy ;
Meyers, Barnett ;
Alexopoulos, George ;
Banerjee, Samprit ;
English, Judith ;
Kocsis, James ;
Ladenheim, Barbara ;
Latoussakis, Vassilios ;
Marino, Patricia ;
Palekar, Nikhil ;
Pollari, Christina ;
Wu, Yiyuan ;
Whyte, Ellen ;
Butters, Meryl ;
Gildengers, Ariel ;
Kincman, Joelle ;
Zmuda, Michelle .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2019, 322 (07) :622-631
[10]   NLR members NLRC4 and NLRP3 mediate sterile inflammasome activation in microglia and astrocytes [J].
Freeman, Leslie ;
Guo, Haitao ;
David, Clement N. ;
Brickey, W. June ;
Jha, Sushmita ;
Ting, Jenny P. -Y. .
JOURNAL OF EXPERIMENTAL MEDICINE, 2017, 214 (05) :1351-1370