Functional Roles of H3K4 Methylation in Transcriptional Regulation

被引:1
作者
Yu, Haoming [1 ]
Lesch, Bluma J. [1 ,2 ,3 ]
机构
[1] Yale Sch Med, Dept Genet, New Haven, CT 06510 USA
[2] Yale Sch Med, Dept Obstet Gynecol & Reprod Sci, New Haven, CT 06510 USA
[3] Yale Sch Med, Yale Canc Ctr, New Haven, CT 06511 USA
关键词
Chromatin; transcription; histone; methylation; differentiation; STEM-CELL DIFFERENTIATION; HISTONE H3; LYSINE; 4; METHYLTRANSFERASE ACTIVITY; UNIFIED ARCHITECTURE; CHROMATIN; TRIMETHYLATION; PROMOTERS; ENHANCERS; MONOMETHYLATION;
D O I
10.1080/10985549.2024.2388254
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Histone 3 lysine 4 methylation (H3K4me) is a highly evolutionary conserved chromatin modification associated with active transcription, and its three methylation states-mono, di, and trimethylation-mark distinct regulatory elements. However, whether H3K4me plays functional roles in transcriptional regulation or is merely a by-product of histone methyltransferases recruited to actively transcribed loci is still under debate. Here, we outline the studies that have addressed this question in yeast, Drosophila, and mammalian systems. We review evidence from histone residue mutation, histone modifier manipulation, and epigenetic editing, focusing on the relative roles of H3K4me1 and H3K4me3. We conclude that H3K4me1 and H3K4me3 may have convergent functions in establishing open chromatin and promoting transcriptional activation during cell differentiation.
引用
收藏
页码:505 / 515
页数:11
相关论文
共 81 条
  • [1] A unified architecture of transcriptional regulatory elements
    Andersson, Robin
    Sandelin, Albin
    Danko, Charles G.
    [J]. TRENDS IN GENETICS, 2015, 31 (08) : 426 - 433
  • [2] Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription
    Ardehali, M. Behfar
    Mei, Amanda
    Zobeck, Katie L.
    Caron, Matthieu
    Lis, John T.
    Kusch, Thomas
    [J]. EMBO JOURNAL, 2011, 30 (14) : 2817 - 2828
  • [3] H3K4me1 Distribution Predicts Transcription State and Poising at Promoters
    Bae, Sunhee
    Lesch, Bluma J.
    [J]. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2020, 8
  • [4] High-resolution profiling of histone methylations in the human genome
    Barski, Artern
    Cuddapah, Suresh
    Cui, Kairong
    Roh, Tae-Young
    Schones, Dustin E.
    Wang, Zhibin
    Wei, Gang
    Chepelev, Iouri
    Zhao, Keji
    [J]. CELL, 2007, 129 (04) : 823 - 837
  • [5] H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
    Benayoun, Berenice A.
    Pollina, Elizabeth A.
    Ucar, Duygu
    Mahmoudi, Salah
    Karra, Kalpana
    Wong, Edith D.
    Devarajan, Keerthana
    Daugherty, Aaron C.
    Kundaje, Anshul B.
    Mancini, Elena
    Hitz, Benjamin C.
    Gupta, Rakhi
    Rando, Thomas A.
    Baker, Julie C.
    Snyder, Michael P.
    Cherry, J. Michael
    Brunet, Anne
    [J]. CELL, 2014, 158 (03) : 673 - 688
  • [6] The Bivalent Genome: Characterization, Structure, and Regulation
    Blanco, Enrique
    Gonzalez-Ramirez, Mar
    Alcaine-Colet, Anna
    Aranda, Sergi
    Di Croce, Luciano
    [J]. TRENDS IN GENETICS, 2020, 36 (02) : 118 - 131
  • [7] Enhancer-associated H3K4 methylation safeguards in vitro germline competence
    Bleckwehl, Tore
    Crispatzu, Giuliano
    Schaaf, Kaitlin
    Respuela, Patricia
    Bartusel, Michaela
    Benson, Laura
    Clark, Stephen J.
    Dorighi, Kristel M.
    Barral, Antonio
    Laugsch, Magdalena
    van Ijcken, Wilfred F. J.
    Manzanares, Miguel
    Wysocka, Joanna
    Reikf, Wolf
    Rada-Iglesias, Alvaro
    [J]. NATURE COMMUNICATIONS, 2021, 12 (01)
  • [8] The H3K4 methyltransferase Setd1a is first required at the epiblast stage, whereas Setd1b becomes essential after gastrulation
    Bledau, Anita S.
    Schmidt, Kerstin
    Neumann, Katrin
    Hill, Undine
    Ciotta, Giovanni
    Gupta, Ashish
    Torres, Davi Coe
    Fu, Jun
    Kranz, Andrea
    Stewart, A. Francis
    Anastassiadis, Konstantinos
    [J]. DEVELOPMENT, 2014, 141 (05): : 1022 - 1035
  • [9] Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
    Briggs, SD
    Bryk, M
    Strahl, BD
    Cheung, WL
    Davie, JK
    Dent, SYR
    Winston, F
    Allis, CD
    [J]. GENES & DEVELOPMENT, 2001, 15 (24) : 3286 - 3295
  • [10] The SET1 Complex Selects Actively Transcribed Target Genes via Multivalent Interaction with CpG Island Chromatin
    Brown, David A.
    Di Cerbo, Vincenzo
    Feldmann, Angelika
    Ahn, Jaewoo
    Ito, Shinsuke
    Blackledge, Neil P.
    Nakayama, Manabu
    McClellan, Michael
    Dimitrova, Emilia
    Turberfield, Anne H.
    Long, Hannah K.
    King, Hamish W.
    Kriaucionis, Skirmantas
    Schermelleh, Lothar
    Kutateladze, Tatiana G.
    Koseki, Haruhiko
    Klose, Robert J.
    [J]. CELL REPORTS, 2017, 20 (10): : 2313 - 2327