Frontiers in artificial intelligence-directed light-sheet microscopy for uncovering biological phenomena and multiorgan imaging

被引:1
作者
Zhu, Enbo [1 ,2 ,3 ,4 ]
Li, Yan-Ruide [4 ]
Margolis, Samuel [2 ]
Wang, Jing [1 ]
Wang, Kaidong [2 ,3 ]
Zhang, Yaran [1 ]
Wang, Shaolei [1 ]
Park, Jongchan [1 ]
Zheng, Charlie [2 ]
Yang, Lili [4 ,5 ,6 ,7 ]
Chu, Alison [8 ]
Zhang, Yuhua [9 ]
Gao, Liang [1 ]
Hsiai, Tzung K. [1 ,2 ,3 ]
机构
[1] Univ Calif Los Angeles, Dept Bioengn, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, David Geffen Sch Med, Dept Med, Div Cardiol, Los Angeles, CA USA
[3] Greater Los Angeles VA Healthcare Syst, Dept Med, Los Angeles, CA USA
[4] Univ Calif Los Angeles, Dept Microbiol Immunol & Mol Genet, Los Angeles, CA USA
[5] Univ Calif Los Angeles, Eli & Edythe Broad Ctr Regenerat Med & Stem Cell, Los Angeles, CA USA
[6] Univ Calif Los Angeles, Jonsson Comprehens Canc Ctr, David Geffen Sch Med, Los Angeles, CA USA
[7] Univ Calif Los Angeles, Mol Biol Inst, Los Angeles, CA USA
[8] Univ Calif Los Angeles, David Geffen Sch Med, Dept Pediat, Div Neonatol & Dev Biol, Los Angeles, CA USA
[9] Univ Calif Los Angeles, Doheny Eye Inst, Dept Ophthalmol, Los Angeles, CA USA
关键词
artificial intelligence; biological tissues; biomedical imaging; light-sheet fluorescence microscopy; HIGH-RESOLUTION; FLUORESCENCE MICROSCOPY; DEEP TISSUE; WHOLE-BODY; BESSEL; SINGLE; TUMOR; QUANTIFICATION; DYNAMICS; VISUALIZATION;
D O I
10.1002/VIW.20230087
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
Light-sheet fluorescence microscopy (LSFM) introduces fast scanning of biological phenomena with deep photon penetration and minimal phototoxicity. This advancement represents a significant shift in 3-D imaging of large-scale biological tissues and 4-D (space + time) imaging of small live animals. The large data associated with LSFM require efficient imaging acquisition and analysis with the use of artificial intelligence (AI)/machine learning (ML) algorithms. To this end, AI/ML-directed LSFM is an emerging area for multiorgan imaging and tumor diagnostics. This review will present the development of LSFM and highlight various LSFM configurations and designs for multiscale imaging. Optical clearance techniques will be compared for effective reduction in light scattering and optimal deep-tissue imaging. This review will further depict a diverse range of research and translational applications, from small live organisms to multiorgan imaging to tumor diagnosis. In addition, this review will address AI/ML-directed imaging reconstruction, including the application of convolutional neural networks (CNNs) and generative adversarial networks (GANs). In summary, the advancements of LSFM have enabled effective and efficient post-imaging reconstruction and data analyses, underscoring LSFM's contribution to advancing fundamental and translational research. The integration of artificial intelligence in light sheet imaging enhances the precision and efficiency of analyzing complex biological specimens, leading to more detailed and accurate insights into cellular and tissue structures. image
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页数:24
相关论文
共 142 条
[1]   3D imaging of cleared human skin biopsies using light-sheet microscopy: A new way to visualize in-depth skin structure [J].
Abadie, S. ;
Jardet, C. ;
Colombelli, J. ;
Chaput, B. ;
David, A. ;
Grolleau, J. -L. ;
Bedos, P. ;
Lobjois, V. ;
Descargues, P. ;
Rouquette, J. .
SKIN RESEARCH AND TECHNOLOGY, 2018, 24 (02) :294-303
[2]   Membrane dynamics of dividing cells imaged by lattice light-sheet microscopy [J].
Aguet, Francois ;
Upadhyayula, Srigokul ;
Gaudin, Raphael ;
Chou, Yi-ying ;
Cocucci, Emanuele ;
He, Kangmin ;
Chen, Bi-Chang ;
Mosaliganti, Kishore ;
Pasham, Mithun ;
Skillern, Wesley ;
Legant, Wesley R. ;
Liu, Tsung-Li ;
Findlay, Greg ;
Marino, Eric ;
Danuser, Gaudenz ;
Megason, Sean ;
Betzig, Eric ;
Kirchhausen, Tom .
MOLECULAR BIOLOGY OF THE CELL, 2016, 27 (22) :3418-3435
[3]   Blood flow modeling reveals improved collateral artery performance during the regenerative period in mammalian hearts [J].
Anbazhakan, Suhaas ;
Coronado, Pamela E. Rios ;
Sy-Quia, Ana Natalia L. ;
Seow, Lek Wei ;
Hands, Aubrey M. ;
Zhao, Mingming ;
Dong, Melody L. ;
Pfaller, Martin R. ;
Amir, Zhainib A. ;
Raftrey, Brian C. ;
Cook, Christopher K. ;
D'Amato, Gaetano ;
Fan, Xiaochen ;
Williams, Ian M. ;
Jha, Sawan K. ;
Bernstein, Daniel ;
Nieman, Koen ;
Pasca, Anca M. ;
Marsden, Alison L. ;
Red Horse, Kristy .
NATURE CARDIOVASCULAR RESEARCH, 2022, 1 (08) :775-+
[4]   Advanced microscopy to elucidate cardiovascular injury and regeneration: 4D light-sheet imaging [J].
Baek, Kyung In ;
Ding, Yichen ;
Chang, Chih-Chiang ;
Chang, Megan ;
Packard, Rene R. Sevag ;
Hsu, Jeffrey J. ;
Fei, Peng ;
Hsiai, Tzung K. .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2018, 138 :105-115
[5]   Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction [J].
Belthangady, Chinmay ;
Royer, Loic A. .
NATURE METHODS, 2019, 16 (12) :1215-1225
[6]   Visualizing dynamic microvillar search and stabilization during ligand detection by T cells [J].
Cai, En ;
Marchuk, Kyle ;
Beemiller, Peter ;
Beppler, Casey ;
Rubashkin, Matthew G. ;
Weaver, Valerie M. ;
Gerard, Audrey ;
Liu, Tsung-Li ;
Chen, Bi-Chang ;
Betzig, Eric ;
Bartumeus, Frederic ;
Krummel, Matthew F. .
SCIENCE, 2017, 356 (6338)
[7]   Whole-mouse clearing and imaging at the cellular level with vDISCO [J].
Cai, Ruiyao ;
Kolabas, Zeynep Ilgin ;
Pan, Chenchen ;
Mai, Hongcheng ;
Zhao, Shan ;
Kaltenecker, Doris ;
Voigt, Fabian F. ;
Molbay, Muge ;
Ohn, Tzu-lun ;
Vincke, Cecile ;
Todorov, Mihail I. ;
Helmchen, Fritjof ;
Van Ginderachter, Jo A. ;
Ertuerk, Ali .
NATURE PROTOCOLS, 2023, 18 (04) :1197-+
[8]   Universal light-sheet generation with field synthesis [J].
Chang, Bo-Jui ;
Kittisopikul, Mark ;
Dean, Kevin M. ;
Roudot, Philippe ;
Welf, Erik S. ;
Fiolka, Reto .
NATURE METHODS, 2019, 16 (03) :235-+
[9]   Three-dimensional Imaging Coupled with Topological Quantification Uncovers Retinal Vascular Plexuses Undergoing Obliteration [J].
Chang, Chih-Chiang ;
Chu, Alison ;
Meyer, Scott ;
Ding, Yichen ;
Sun, Michel M. ;
Abiri, Parinaz ;
Baek, Kyung In ;
Gudapati, Varun ;
Ding, Xili ;
Guihard, Pierre ;
Bostrom, Kristina, I ;
Li, Song ;
Gordon, Lynn K. ;
Zheng, Jie J. ;
Hsiai, Tzung K. .
THERANOSTICS, 2021, 11 (03) :1162-1175
[10]   Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution [J].
Chen, Bi-Chang ;
Legant, Wesley R. ;
Wang, Kai ;
Shao, Lin ;
Milkie, Daniel E. ;
Davidson, Michael W. ;
Janetopoulos, Chris ;
Wu, Xufeng S. ;
Hammer, John A., III ;
Liu, Zhe ;
English, Brian P. ;
Mimori-Kiyosue, Yuko ;
Romero, Daniel P. ;
Ritter, Alex T. ;
Lippincott-Schwartz, Jennifer ;
Fritz-Laylin, Lillian ;
Mullins, R. Dyche ;
Mitchell, Diana M. ;
Bembenek, Joshua N. ;
Reymann, Anne-Cecile ;
Boehme, Ralph ;
Grill, Stephan W. ;
Wang, Jennifer T. ;
Seydoux, Geraldine ;
Tulu, U. Serdar ;
Kiehart, Daniel P. ;
Betzig, Eric .
SCIENCE, 2014, 346 (6208) :439-+