Thermodynamic Bounds on Generalized Transport: From Single-Molecule to Bulk Observables

被引:3
作者
Dieball, Cai [1 ]
Godec, Alja z [1 ]
机构
[1] Max Planck Inst Multidisciplinary Sci, Math Biophys Grp, D-37077 Gottingen, Germany
基金
欧洲研究理事会;
关键词
X-RAY-SCATTERING; INELASTIC NEUTRON-SCATTERING; SMALL-ANGLE SCATTERING; STRUCTURAL DYNAMICS; PROTEINS; RELAXATION; DNA;
D O I
10.1103/PhysRevLett.133.067101
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We prove that the transport of any differentiable scalar observable in d-dimensional nonequilibrium systems is bounded from above by the total entropy production scaled by the amount the observation "stretches" microscopic coordinates. The result-a time-integrated generalized speed limit-reflects the thermodynamic cost of transport of observables, and places underdamped and overdamped stochastic dynamics on equal footing with deterministic motion. Our work allows for stochastic thermodynamics to make contact with bulk experiments, and fills an important gap in thermodynamic inference, since microscopic dynamics is, at least for short times, underdamped. Requiring only averages but not sample-tosample fluctuations, the proven transport bound is practical and applicable not only to single-molecule but also bulk experiments where only averages are observed, which we demonstrate by examples. Our results may facilitate thermodynamic inference on molecular machines without an obvious directionality from bulk observations of transients probed, e.g., in time-resolved x-ray scattering.
引用
收藏
页数:7
相关论文
共 85 条
[1]   Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering [J].
Akiyama, S ;
Takahashi, S ;
Kimura, T ;
Ishimori, K ;
Morishima, I ;
Nishikawa, Y ;
Fujisawa, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (03) :1329-1334
[2]  
aps, About us, DOI [10.1103/PhysRevLett.133.067101, DOI 10.1103/PHYSREVLETT.133.067101]
[3]  
Arnlund D, 2014, NAT METHODS, V11, P923, DOI [10.1038/NMETH.3067, 10.1038/nmeth.3067]
[4]   Refined Second Law of Thermodynamics for Fast Random Processes [J].
Aurell, Erik ;
Gawedzki, Krzysztof ;
Mejia-Monasterio, Carlos ;
Mohayaee, Roya ;
Muratore-Ginanneschi, Paolo .
JOURNAL OF STATISTICAL PHYSICS, 2012, 147 (03) :487-505
[5]   Optimal Protocols and Optimal Transport in Stochastic Thermodynamics [J].
Aurell, Erik ;
Mejia-Monasterio, Carlos ;
Muratore-Ginanneschi, Paolo .
PHYSICAL REVIEW LETTERS, 2011, 106 (25)
[6]   Cost and Precision of Brownian Clocks [J].
Barato, Andre C. ;
Seifert, Udo .
PHYSICAL REVIEW X, 2016, 6 (04)
[7]   Thermodynamic Uncertainty Relation for Biomolecular Processes [J].
Barato, Andre C. ;
Seifert, Udo .
PHYSICAL REVIEW LETTERS, 2015, 114 (15)
[8]  
Benamou JD, 2000, NUMER MATH, V84, P375, DOI 10.1007/s002119900117
[9]   Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging [J].
Berndsen, Zachary T. ;
Keller, Nicholas ;
Grimes, Shelley ;
Jardine, Paul J. ;
Smith, Douglas E. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (23) :8345-8350
[10]  
Blickle V, 2012, NAT PHYS, V8, P143, DOI [10.1038/NPHYS2163, 10.1038/nphys2163]