Biogeography of Lentibacter algarum, , description of a new strain isolated from the North Sea and emended genus and species descriptions

被引:0
作者
Hahnke, Sarah [1 ,3 ]
Giebel, Helge-Ansgar [1 ]
Freese, Heike M. [2 ]
Moraru, Cristina [1 ,4 ]
Tindall, Brian J. [2 ]
Simon, Meinhard [1 ]
Brinkhoff, Thorsten [1 ]
机构
[1] Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm ICBM, Carl Von Ossietzky Str 9-11, D-26129 Oldenburg, Germany
[2] DSMZ Deutsch Sammlung Mikroorganismen & Zellkultur, Leibniz Inst, Inhoffenstr 7B, D-38124 Braunschweig, Germany
[3] Carl von Ossietzky Univ Oldenburg, Dept Human Med, Carl Von Ossietzky Str 9-11, D-26129 Oldenburg, Germany
[4] Univ Duisburg Essen, Univ Alliance Ruhr, Res Ctr One Hlth Ruhr, Environm Metagen, D-45141 Essen, Germany
关键词
biogeography; German Bight; Lentibacter algarum; North Sea; Roseobacteraceae; strain SH36; SP NOV; ROSEOBACTER-CLADE; PLANKTOTALEA-FRISIA; PHYTOPLANKTON BLOOM; DNA HYBRIDIZATION; LIPID-COMPOSITION; WESER ESTUARY; GENOME; BACTERIUM; DYNAMICS;
D O I
10.1099/ijsem.0.006472
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A new heterotrophic, aerobic alphaproteobacterium, designated strain SH36 (=DSM 23330=LMG 25292), was obtained from a seawater sample collected in the open North Sea during a phytoplankton bloom. Analysis of the 16S rRNA gene sequence revealed affiliation of strain SH36 to the species Lentibacter algarum (family Roseobacteraceae), ), showing 100 and 99.9 % sequence similarity to the 16S rRNA genes of the strains L. algarum ZXM098 and ZXM100T. T . Digital DNA-DNA hybridization of strain SH36 with the type strain of L. algarum showed 98.0 % relatedness, confirming that strain SH36 can be classified within the same species. All three L. algarum strains were compared by physiological, morphological, chemotaxonomic, and genotypic characteristics. The strains showed only minor differences in the composition of fatty acids and polar lipids, but considerable physiological differences. Comparison of the 16S rRNA gene sequence of SH36 with sequences present in GenBank revealed that phylotypes with >= 98.65 % sequence identity to the type strain of L. algarum were found at different marine and estuarine locations of temperate and subtropic regions. Furthermore, by using a specific PCR approach L. algarum was detected throughout annual cycles at the offshore station at Helgoland Roads in the German Bight, indicating that this species is a permanent member of the microbial community in the North Sea.
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