Draft genome sequences of Epichloe bromicola strains isolated from Elymus ciliaris

被引：0

作者：

Miura, Atsushi ^{[1
]}

Imano, Sayaka ^{[1
]}

Ashida, Akira ^{[1
]}

Sato, Ikuo ^{[1
]}

Chiba, Sotaro ^{[1
]}

Tanaka, Aiko ^{[1
]}

Camagna, Maurizio ^{[1
]}

Takemoto, Daigo ^{[1
]}

机构：

[1] Nagoya Univ, Grad Sch Bioagr Sci, Nagoya, Aichi, Japan

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 10期

基金：

日本学术振兴会;

关键词：

endophyte; Epichloe bromicola; Elymus ciliaris; ENDOPHYTES; SYMBIONTS;

D O I：

10.1128/mra.00317-24

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Epichloe species are endophytic fungi that systemically colonize grass species. Here, we report the genome sequences of Epichloe bromicola strains HS and DP isolated for the first time from Elymus ciliaris in Nagoya, Japan.

引用

页数：3

共 15 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2] fastp: an ultra-fast all-in-one FASTQ preprocessor [J].

Chen, Shifu ;

Zhou, Yanqing ;

Chen, Yaru ;

Gu, Jia .

BIOINFORMATICS, 2018, 34 (17) :884-890

[3] Growth of Epichloe/Neotyphodium and p-endophytes in leaves of Lolium and Festuca grasses [J].

Christensen, MJ ;

Bennett, RJ ;

Schmid, J .

MYCOLOGICAL RESEARCH, 2002, 106 :93-106

[4]

Gabriel L, 2024, bioRxiv, DOI [10.1101/2023.06.10.544449, 10.1101/2023.06.10.544449, DOI 10.1101/2023.06.10.544449]

[5] QUAST: quality assessment tool for genome assemblies [J].

Gurevich, Alexey ;

Saveliev, Vladislav ;

Vyahhi, Nikolay ;

Tesler, Glenn .

BIOINFORMATICS, 2013, 29 (08) :1072-1075

[6] Phylogenetic analysis revealed reticulate evolution of allotetraploid Elymus ciliaris [J].

Hui, Qianni ;

Yan, Chi ;

Sun, Genlou .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (03) :805-813

[7] Two closely related Rho GTPases, Cdc42 and RacA, of the en-dophytic fungus Epichloe festucae have contrasting roles for ROS production and symbiotic infection synchronized with the host plant [J].

Kayano, Yuka ;

Tanaka, Aiko ;

Takemoto, Daigo .

PLOS PATHOGENS, 2018, 14 (01)

[8] BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes [J].

Manni, Mose ;

Berkeley, Matthew R. ;

Seppey, Mathieu ;

Simao, Felipe A. ;

Zdobnov, Evgeny M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2021, 38 (10) :4647-4654

[9] Identification of ε-Poly-L-lysine as an Antimicrobial Product from an Epichloe Endophyte and Isolation of Fungal ε-PL Synthetase Gene [J].

Purev, Enkhee ;

Kondo, Tatsuhiko ;

Takemoto, Daigo ;

Niones, Jennifer T. ;

Ojika, Makoto .

MOLECULES, 2020, 25 (05)

[10] Telomere-to-Telomere Genome Sequences across a Single Genus Reveal Highly Variable Chromosome Rearrangement Rates but Absolute Stasis of Chromosome Number [J].

Quenu, Mathieu ;

Treindl, Artemis D. ;

Lee, Kate ;

Takemoto, Daigo ;

Thuenen, Torsten ;

Ashrafi, Samad ;

Winter, David ;

Ganley, Austen R. D. ;

Leuchtmann, Adrian ;

Young, Carolyn A. ;

Cox, Murray P. .

JOURNAL OF FUNGI, 2022, 8 (07)

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