Nanopore-based sensors for DNA sequencing: a review

被引:4
作者
Wei, Jiangtao [1 ]
Hong, Hao [1 ,2 ]
Wang, Xing [1 ]
Lei, Xin [3 ]
Ye, Minjie [4 ]
Liu, Zewen [1 ]
机构
[1] Tsinghua Univ, Sch Integrated Circuits, Beijing 100084, Peoples R China
[2] Delft Univ Technol, Dept Microelect, NL-2628 CD Delft, Netherlands
[3] Beihang Univ, Sch Chem, Beijing 100084, Peoples R China
[4] Tsinghua Univ, Dept Engn Phys, Beijing 100084, Peoples R China
关键词
SOLID-STATE NANOPORES; FIELD-EFFECT TRANSISTORS; GRAPHENE NANORIBBON; POLYMER TRANSLOCATION; SINGLE NUCLEOTIDES; MOLECULE DETECTION; AU NANOPARTICLES; CURRENT SIGNALS; TRANSPORT; IDENTIFICATION;
D O I
10.1039/d4nr01325e
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Nanopore sensors, owing to their distinctive structural properties, can be used to detect biomolecular translocation events. These sensors operate by monitoring variations in electric current amplitude and duration, thereby enabling the calibration and distinction of various biomolecules. As a result, nanopores emerge as a potentially powerful tool in the field of deoxyribonucleic acid (DNA) sequencing. However, the interplay between testing bandwidth and noise often leads to the loss of part of the critical translocation signals, presenting a substantial challenge for the precise measurement of biomolecules. In this context, innovative detection mechanisms have been developed, including optical detection, tunneling current detection, and nanopore field-effect transistor (FET) detection. These novel detection methods are based on but beyond traditional nanopore techniques and each of them has unique advantages. Notably, nanopore FET sensors stand out for their high signal-to-noise ratio (SNR) and high bandwidth measurement capabilities, overcoming the limitations typically associated with traditional solid-state nanopore (SSN) technologies and thus paving the way for new avenues to biomolecule detection. This review begins by elucidating the fundamental detection principles, development history, applications, and fabrication methods for traditional SSNs. It then introduces three novel detection mechanisms, with a particular emphasis on nanopore FET detection. Finally, a comprehensive analysis of the advantages and challenges associated with both SSNs and nanopore FET sensors is performed, and then insights into the future development trajectories for nanopore FET sensors in DNA sequencing are provided. This review has two main purposes: firstly, to provide researchers with a preliminary understanding of advancements in the nanopore field, and secondly, to offer a comprehensive analysis of the fabrication techniques, transverse current detection principles, challenges, and future development trends in the field of nanopore FET sensors. This comprehensive analysis aims to help give researchers in-depth insights into cutting-edge advancements in the field of nanopore FET sensors. Nanopore sensors, owing to their distinctive structural properties, can be used to detect biomolecular translocation events. Images reproduced with permission; see full details in paper.
引用
收藏
页码:18732 / 18766
页数:35
相关论文
共 224 条
[1]   Tau and tubulin protein aggregation characterization by solid-state nanopore method and atomic force microscopy [J].
Acharjee, Mitu C. ;
Li, Haopeng ;
Rollings, Ryan ;
Ma, Bo ;
Tung, Steve ;
Li, Jiali .
JOURNAL OF APPLIED PHYSICS, 2023, 133 (02)
[2]   Next-Generation Epigenetic Detection Technique: Identifying Methylated Cytosine Using Graphene Nanopore [J].
Ahmed, Towfiq ;
Haraldsen, Jason T. ;
Zhu, Jian-Xin ;
Balatsky, Alexander V. .
JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2014, 5 (15) :2601-2607
[3]   Correlation dynamics and enhanced signals for the identification of serial biomolecules and DNA bases [J].
Ahmed, Towfiq ;
Haraldsen, Jason T. ;
Rehr, John J. ;
Di Ventra, Massimiliano ;
Schuller, Ivan ;
Balatsky, Alexander V. .
NANOTECHNOLOGY, 2014, 25 (12)
[4]   Tuneable graphene nanopores for single biomolecule detection [J].
Al-Dirini, Feras ;
Mohammed, Mahmood A. ;
Hossain, Md Sharafat ;
Hossain, Faruque M. ;
Nirmalathas, Ampalavanapillai ;
Skafidas, Efstratios .
NANOSCALE, 2016, 8 (19) :10066-10077
[5]   Boosting DNA Recognition Sensitivity of Graphene Nanogaps through Nitrogen Edge Functionalization [J].
Amorim, Rodrigo G. ;
Rocha, Alexandre R. ;
Scheicher, Ralph H. .
JOURNAL OF PHYSICAL CHEMISTRY C, 2016, 120 (34) :19384-19388
[6]   Probing Solid-State Nanopores with Light for the Detection of Unlabeled Analytes [J].
Anderson, Brett N. ;
Assad, Ossama N. ;
Gilboa, Tal ;
Squires, Allison H. ;
Bar, Daniel ;
Meller, Amit .
ACS NANO, 2014, 8 (11) :11836-11845
[7]   Track size and track structure in polymer irradiated by heavy ions [J].
Apel, P ;
Schulz, A ;
Spohr, R ;
Trautmann, C ;
Vutsadakis, V .
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS, 1998, 146 (1-4) :468-474
[8]   Solid-State Nanopore Platform Integrated with Machine Learning for Digital Diagnosis of Virus Infection [J].
Arima, Akihide ;
Tsutsui, Makusu ;
Washio, Takashi ;
Baba, Yoshinobu ;
Kawai, Tomoji .
ANALYTICAL CHEMISTRY, 2021, 93 (01) :215-227
[9]   Single molecule detection with graphene and other two-dimensional materials: nanopores and beyond [J].
Arjmandi-Tash, Hadi ;
Belyaeva, Liubov A. ;
Schneider, Gregory F. .
CHEMICAL SOCIETY REVIEWS, 2016, 45 (03) :476-493
[10]   Electrically Controlled Nanofluidic DNA Sluice for Data Storage Applications [J].
Athreya, Nagendra ;
Khandelwal, Apratim ;
Li, Xiuling ;
Leburton, Jean-Pierre .
ACS APPLIED NANO MATERIALS, 2021, 4 (10) :11063-11069