Defensins identified through molecular de-extinction

被引:2
作者
Ferreira, Adryan F. L. [1 ]
Osiro, Karen O. [2 ]
de Oliveira, Kamila B. S. [1 ]
Cardoso, Marlon H. [1 ,2 ]
de Lima, Lucas R. [1 ]
Duque, Harry M. [2 ]
Macedo, Maria L. R. [3 ]
Landon, Celine [4 ]
de la Fuente-Nunez, Cesar [5 ,6 ,7 ,8 ,9 ]
Franco, Octavio L. [1 ,2 ]
机构
[1] Univ Catolica Dom Bosco, S Inova Biotech, Posgrad Biotecnol, Campo Grande, MS, Brazil
[2] Univ Catolica Brasilia, Ctr Anal Prote & Bioquim, Posgrad Ciencias Genomicas & Biotecnol, Brasilia, Brazil
[3] Univ Fed Mato Grosso Do Sul, Lab Purificacao Proteinas & Suas Funcoes Biol, Cidade Univ, BR-79070900 Campo Grande, MS, Brazil
[4] Natl Ctr Sci Res CNRS, Ctr Mol Biophys, Orleans, France
[5] Univ Penn, Inst Biomed Informat, Inst Translat Med & Therapeut, Perelman Sch Med,Dept Psychiat & Microbiol,Machine, Philadelphia, PA 19104 USA
[6] Univ Penn, Sch Engn & Appl Sci, Dept Bioengn, Philadelphia, PA 19104 USA
[7] Univ Penn, Sch Engn & Appl Sci, Dept Chem & Biomol Engn, Philadelphia, PA 19104 USA
[8] Univ Penn, Sch Arts & Sci, Dept Chem, Philadelphia, PA 19104 USA
[9] Univ Penn, Penn Inst Computat Sci, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院;
关键词
BETA-DEFENSINS; IQ-TREE; EVOLUTION; SEQUENCE; ANTIBACTERIAL; GROMACS; MOA;
D O I
10.1016/j.xcrp.2024.102193
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Molecular de-extinction is an emerging field that identifies potentially useful molecules throughout evolution. Here, we computationally mine genomes, searching for molecules called defensins, which play a role in host immunity. Our approach leads to the discovery of six undescribed beta-defensins, five of which are derived from two different extinct bird species and one from a mammalian species. These organisms included an extinct moa species (Anomalopteryx didiformis) that inhabited New Zealand and the extinct Spix's macaw (Cyanopsitta spixii), which was endemic to Brazil, as well as the black rhino (Diceros bicornis minor). Evolutionary and structural analyses of the beta-defensins are performed to further characterize these molecules. This study identifies molecules from extinct organisms, revealing defensins and opening new avenues for antibiotic discovery.
引用
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页数:17
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