The evolution of a population by means of genetic drift and natural selection operating on a gene regulatory network (GRN) of an individual has not been scrutinized in depth. Thus, the relative importance of various evolutionary forces and processes on shaping genetic variability in GRNs is understudied. In this study, we implemented a simulation framework, called EvoNET, that simulates forward-in- time the evolution of GRNs in a population. The fi tness effect of mutations is not constant, rather fi tness of each individual is evaluated on the phenotypic level, by measuring its distance from an optimal phenotype. Each individual goes through a maturation period, where its GRN may reach an equilibrium, thus deciding its phenotype. Afterwards, individuals compete to produce the next generation. We examine properties of the GRN evolution, such as robustness against the deleterious effect of mutations and the role of genetic drift. We are able to confirm fi rm previous hypotheses regarding the effect of mutations and we provide new insights on the interplay between random genetic drift and natural selection.
机构:
Univ Paris 11, UMR 8059, F-91405 Orsay, France
Ferme Moulon, UMR Genet Vegetale, F-91190 Gif Sur Yvette, FranceUniv Paris 11, UMR 8059, F-91405 Orsay, France
Chevin, Luis-Miguel
;
Hospital, Frederic
论文数: 0引用数: 0
h-index: 0
机构:
INRA, UMR Genet & Diversite Anim 1236, F-78352 Jouy En Josas, FranceUniv Paris 11, UMR 8059, F-91405 Orsay, France
机构:
Univ Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, ItalyUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Greco, Samuele
;
Balseiro, Pablo
论文数: 0引用数: 0
h-index: 0
机构:
Norce Norwegian Res Ctr AS, Bergen, NorwayUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Balseiro, Pablo
;
Corvelo, Andre
论文数: 0引用数: 0
h-index: 0
机构:
Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Baldiri & Reixac 4, Barcelona 08028, Spain
New York Genome Ctr, New York, NY 10013 USAUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Corvelo, Andre
;
Frias, Leonor
论文数: 0引用数: 0
h-index: 0
机构:
Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Baldiri & Reixac 4, Barcelona 08028, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Frias, Leonor
;
Gut, Marta
论文数: 0引用数: 0
h-index: 0
机构:
Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Baldiri & Reixac 4, Barcelona 08028, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Gut, Marta
;
Gabaldon, Toni
论文数: 0引用数: 0
h-index: 0
机构:
ICREA, Pg Lluis Companys 23, Barcelona 08010, Spain
Barelona Supercomp Ctr BSC CNS, Barcelona 08034, Spain
Inst Res Biomed IRB, Barcelona 08034, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Gabaldon, Toni
;
Pallavicini, Alberto
论文数: 0引用数: 0
h-index: 0
机构:
Anton Dohrn Zool Stn, I-80121 Naples, ItalyUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Pallavicini, Alberto
;
Canchaya, Carlos
论文数: 0引用数: 0
h-index: 0
机构:
Univ Vigo, Dept Biochem Genet & Immunol, Vigo 36310, Spain
Univ Vigo, Biomed Res Ctr CINBIO, Vigo 36310, Spain
Galicia Hlth Res Inst, Vigo 36310, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
机构:
Univ Illinois, Dept Math, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Kantorovitz, Miriam R.
;
Kazemian, Majid
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Kazemian, Majid
;
Kinston, Sarah
论文数: 0引用数: 0
h-index: 0
机构:
Univ Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, EnglandUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Kinston, Sarah
;
Miranda-Saavedra, Diego
论文数: 0引用数: 0
h-index: 0
机构:
Univ Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, EnglandUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Miranda-Saavedra, Diego
;
Zhu, Qiyun
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Zhu, Qiyun
;
Robinson, Gene E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Entomol, Urbana, IL 61801 USA
Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Robinson, Gene E.
;
Goettgens, Berthold
论文数: 0引用数: 0
h-index: 0
机构:
Univ Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, EnglandUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Goettgens, Berthold
;
Halfon, Marc S.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
SUNY Buffalo, Dept Biochem, Buffalo, NY 14260 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Halfon, Marc S.
;
Sinha, Saurabh
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USA
Univ Illinois, Dept Entomol, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
Kazemian, Majid
;
Zhu, Qiyun
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
Zhu, Qiyun
;
Halfon, Marc S.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
SUNY Buffalo, Dept Biochem, Buffalo, NY 14260 USA
SUNY Buffalo, NY State Ctr Excellence Bioinformat & Life Sci, Buffalo, NY 14260 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
Halfon, Marc S.
;
Sinha, Saurabh
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USA
Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
机构:
Univ Paris 11, UMR 8059, F-91405 Orsay, France
Ferme Moulon, UMR Genet Vegetale, F-91190 Gif Sur Yvette, FranceUniv Paris 11, UMR 8059, F-91405 Orsay, France
Chevin, Luis-Miguel
;
Hospital, Frederic
论文数: 0引用数: 0
h-index: 0
机构:
INRA, UMR Genet & Diversite Anim 1236, F-78352 Jouy En Josas, FranceUniv Paris 11, UMR 8059, F-91405 Orsay, France
机构:
Univ Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, ItalyUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Greco, Samuele
;
Balseiro, Pablo
论文数: 0引用数: 0
h-index: 0
机构:
Norce Norwegian Res Ctr AS, Bergen, NorwayUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Balseiro, Pablo
;
Corvelo, Andre
论文数: 0引用数: 0
h-index: 0
机构:
Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Baldiri & Reixac 4, Barcelona 08028, Spain
New York Genome Ctr, New York, NY 10013 USAUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Corvelo, Andre
;
Frias, Leonor
论文数: 0引用数: 0
h-index: 0
机构:
Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Baldiri & Reixac 4, Barcelona 08028, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Frias, Leonor
;
Gut, Marta
论文数: 0引用数: 0
h-index: 0
机构:
Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Baldiri & Reixac 4, Barcelona 08028, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Gut, Marta
;
Gabaldon, Toni
论文数: 0引用数: 0
h-index: 0
机构:
ICREA, Pg Lluis Companys 23, Barcelona 08010, Spain
Barelona Supercomp Ctr BSC CNS, Barcelona 08034, Spain
Inst Res Biomed IRB, Barcelona 08034, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Gabaldon, Toni
;
Pallavicini, Alberto
论文数: 0引用数: 0
h-index: 0
机构:
Anton Dohrn Zool Stn, I-80121 Naples, ItalyUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
Pallavicini, Alberto
;
Canchaya, Carlos
论文数: 0引用数: 0
h-index: 0
机构:
Univ Vigo, Dept Biochem Genet & Immunol, Vigo 36310, Spain
Univ Vigo, Biomed Res Ctr CINBIO, Vigo 36310, Spain
Galicia Hlth Res Inst, Vigo 36310, SpainUniv Trieste, Dept Life Sci, Via Licio Giorgieri 5, I-34127 Trieste, Italy
机构:
Univ Illinois, Dept Math, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Kantorovitz, Miriam R.
;
Kazemian, Majid
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Kazemian, Majid
;
Kinston, Sarah
论文数: 0引用数: 0
h-index: 0
机构:
Univ Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, EnglandUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Kinston, Sarah
;
Miranda-Saavedra, Diego
论文数: 0引用数: 0
h-index: 0
机构:
Univ Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, EnglandUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Miranda-Saavedra, Diego
;
Zhu, Qiyun
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Zhu, Qiyun
;
Robinson, Gene E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Entomol, Urbana, IL 61801 USA
Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Robinson, Gene E.
;
Goettgens, Berthold
论文数: 0引用数: 0
h-index: 0
机构:
Univ Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, EnglandUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Goettgens, Berthold
;
Halfon, Marc S.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
SUNY Buffalo, Dept Biochem, Buffalo, NY 14260 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
Halfon, Marc S.
;
Sinha, Saurabh
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USA
Univ Illinois, Dept Entomol, Urbana, IL 61801 USAUniv Cambridge, Cambridge Inst Med Res, Cambridge CB2 0XY, England
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
Kazemian, Majid
;
Zhu, Qiyun
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
Zhu, Qiyun
;
Halfon, Marc S.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
SUNY Buffalo, Dept Biochem, Buffalo, NY 14260 USA
SUNY Buffalo, NY State Ctr Excellence Bioinformat & Life Sci, Buffalo, NY 14260 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA
Halfon, Marc S.
;
Sinha, Saurabh
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USA
Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USASUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA