Supramolecular assembly governed by tetrel, CN⋅⋅⋅π and other weak noncovalent interactions in two acrylonitrile derivatives with D-π-A topology: Crystallography, optical properties and theoretical studies

被引:0
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作者
Perez-Gutierrez, Enrique
Udayakumar, Mani [2 ,3 ]
Ceballos, Paulina [1 ]
Ceron, Margarita
Venkatesan, Perumal [1 ,4 ]
Percino, M. Judith [1 ]
Thamotharan, Subbiah [2 ,3 ]
机构
[1] Benemerita Univ Autonoma Puebla, Unidad Polimeros & Elect Organ, Inst Ciencias, Val3 Ecocampus Valsequillo,Independencia O2 Sur 50, Puebla 72960, Mexico
[2] SASTRA Deemed Univ, Sch Chem & Biotechnol, Biomol Crystallog Lab, Thanjavur 613401, India
[3] SASTRA Deemed Univ, DBT Bioinformat Ctr BIC, Sch Chem & Biotechnol, Thanjavur 613401, India
[4] Srimad Andavan Arts & Sci Coll Autonomous, Dept Chem, Tv Koil 620005, Tiruchirappalli, India
关键词
Weak noncovalent interactions; Acrylonitrile; Tetrel bond; Cyano & sdot; & sdot; pi stacking; CLP-PIXEL; Hirshfeld surface; SPECTROSCOPIC CHARACTERIZATION; QUANTITATIVE-ANALYSIS; ENERGIES; CONDENSATION; EMISSION; INSIGHTS; PIXEL;
D O I
10.1016/j.molstruc.2024.139650
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Two D-pi-A acrylonitriles, (Z)-3-(4-methoxyphenyl)-2-(pyridin-4-yl)acrylonitrile (1) and (Z)-3-(4-piperidin-1-yl)2-(pyridin-4-yl)acrylonitrile (2), were synthesized to investigate how the varying donor moieties affect their structural and optical properties. Compound 1 crystallized with two crystallographically independent molecules, each showing different orientations of the methoxy group, and exhibited herringbone molecular arrangement in the solid-state. This structure is stabilized by C-H & sdot;& sdot;& sdot;N/pi interactions, pi-stacking, cyano & sdot;& sdot;& sdot;pi stacking (CN & sdot;& sdot;& sdot;pi) and a sigma-hole tetrel bond involving the C and O atoms of the methoxy group. Compound 2 crystallized with a single molecule in the asymmetric unit and displayed columnar packing mode. This structure is stabilized intermolecular C-H & sdot;& sdot;& sdot;N interactions, where all nitrogen atoms serve as acceptors, as well as by intermolecular C-H & sdot;& sdot;& sdot;pi interactions and pi-stacking between adjacent pyridyl rings. Hirshfeld surfaces and 2D-fingerprint plots revealed the effect of donor moieties on the intermolecular interactions. The energetics of the molecular dimers observed in these structures were characterized by both CLP-PIXEL energy and DFT calculations. The nature of the tetrel bond was characterized using molecular electrostatic surface potential and deformation electron density maps. Theoretical charge density analysis was performed to characterize the noncovalent interactions in various molecular dimers of 1 and 2. The absorption spectra of compounds 1 and 2 exhibit a 40 nm red-shift in solution, attributed to the presence of the piperidyl moiety in compound 2.
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页数:17
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