Identification and expression analysis of bZIP transcription factors in Setaria italica in response to dehydration stress

被引:1
|
作者
Yang, Xuefei [1 ]
Gao, Changyong [2 ]
Hu, Yaqian [1 ]
Ma, Qianru [1 ]
Li, Zejun [1 ]
Wang, Jing [1 ]
Li, Zhaoqun [1 ]
Zhang, Li [3 ]
Li, Dongming [1 ]
机构
[1] Inner Mongolia Normal Univ, Sch Life Sci, Key Lab Herbage & Endem Crop Biol, Minist Educ, Hohhot, Peoples R China
[2] Heze Univ, Coll Agr & Bioengn, Heze, Peoples R China
[3] Shanxi Agr Univ, Coll Agr, Taigu, Peoples R China
关键词
foxtail millet; bZIP transcription factor; dehydration stress; gene expression; transcriptome; GENOME-WIDE ANALYSIS; DROUGHT TOLERANCE; GENE-EXPRESSION; POSITIVE REGULATOR; FACTOR FAMILY; ABA; INTEGRATOR; PATHWAY; AREB1;
D O I
10.3389/fgene.2024.1466486
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Among the largest transcription factor families in plants, bZIPs are crucial for various developmental and physiological processes, particularly abiotic stress resistance. Setaria italica has become a model for understanding stress resistance mechanisms. In this study, we identified 90 bZIP transcription factors in the Setaria italica genome. SibZIPs were classified into 13 groups based on references to Arabidopsis bZIPs. Members in the same group shared similar motifs and gene structure pattern. In addition, gene duplication analysis indenfied 37 pairs of segmental duplicated genes and none tandem duplicated genes in S. italica suggesting segmental duplication contributed to the expansion of the S. italica bZIP gene family. Moreover, the number of SibZIPs genes (39) exhibiting higher expression in roots was significantly more than that in other organs. Twelve SibZIP genes were upregulated in response to dehydration stress. In conclusion, our study advances the current understanding of SibZIP genes and provide a number of candidates for functional analysis of drought tolerance in S. italica.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Role of bZIP Transcription Factors in Plant Salt Stress
    Liu, Haotian
    Tang, Xun
    Zhang, Ning
    Li, Shigui
    Si, Huaijun
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (09)
  • [42] Distinct and essential roles of bZIP transcription factors in the stress response and pathogenesis in Alternaria alternata
    Gai, Yunpeng
    Li, Lei
    Liu, Bing
    Ma, Haijie
    Chen, Yanan
    Zheng, Fang
    Sun, Xuepeng
    Wang, Mingshuang
    Jiao, Chen
    Li, Hongye
    MICROBIOLOGICAL RESEARCH, 2022, 256
  • [43] Characterization of bZIP transcription factors from Dimocarpus longan Lour. and analysis of their tissue-specific expression patterns and response to heat stress
    Wei Zheng
    Tongtong Xie
    Xuefei Yu
    Ning Chen
    Ziwei Zhang
    Journal of Genetics, 2020, 99
  • [44] cDNA-AFLP Analysis Reveals Differential Gene Expression in Response to Salt Stress in Foxtail Millet (Setaria italica L.)
    Jayaraman, Ananthi
    Puranik, Swati
    Rai, Neeraj Kumar
    Vidapu, Sudhakar
    Sahu, Pranav Pankaj
    Lata, Charu
    Prasad, Manoj
    MOLECULAR BIOTECHNOLOGY, 2008, 40 (03) : 241 - 251
  • [45] Genome-wide characterization of bZIP transcription factors and their expression patterns in response to drought and salinity stress in Jatropha curcas
    Wang, Zhanjun
    Zhu, Jin
    Yuan, Wenya
    Wang, Ying
    Hu, Peipei
    Jiao, Chunyan
    Xia, Haimeng
    Wang, Dandan
    Cai, Qianwen
    Li, Jie
    Wang, Chenchen
    Zhang, Xie
    Chen, Yansong
    Wang, Zhaoxia
    Ou, Zulan
    Xu, Zhongdong
    Shi, Jisen
    Chen, Jinhui
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2021, 181 : 1207 - 1223
  • [46] Transcriptome analysis reveals key genes in response to salinity stress during seed germination in Setaria italica*
    Zhang, Da
    He, Shuangcheng
    Fu, Ying
    Yu, Ruilu
    Gao, Xin
    Wang, Zhonghua
    Liu, Zijin
    Guo, Yuan
    Chen, Mingxun
    ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2021, 191
  • [47] Identification and Functional Analysis of bZIP Genes in Cotton Response to Drought Stress
    Zhang, Boyang
    Feng, Cheng
    Chen, Lin
    Li, Baoqi
    Zhang, Xianlong
    Yang, Xiyan
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (23)
  • [48] The Arabidopsis NAC Transcription Factor ANAC096 Cooperates with bZIP-Type Transcription Factors in Dehydration and Osmotic Stress Responses
    Xu, Zheng-Yi
    Kim, Soo Youn
    Hyeon, Do Young
    Kim, Dae Heon
    Dong, Ting
    Park, Youngmin
    Jin, Jing Bo
    Joo, Se-Hwan
    Kim, Seong-Ki
    Hong, Jong Chan
    Hwang, Daehee
    Hwang, Inhwan
    PLANT CELL, 2013, 25 (11): : 4708 - 4724
  • [49] Identification and Characterization of Shaker K+ Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response
    Zhang, Ben
    Guo, Yue
    Wang, Hui
    Wang, Xiaoxia
    Lv, Mengtao
    Yang, Pu
    Zhang, Lizhen
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [50] Genome-wide identification and expression analysis of WRKY transcription factors in pearl millet (Pennisetum glaucum) under dehydration and salinity stress
    Chanwala, Jeky
    Satpati, Suresh
    Dixit, Anshuman
    Parida, Ajay
    Giri, Mrunmay Kumar
    Dey, Nrisingha
    BMC GENOMICS, 2020, 21 (01)