Oxford Nanopore long read-based shotgun metagenomic data sets of simulated bacterial communities originating from fresh spinach and surface water

被引：0

作者：

Chen, Zhao ^{[1
,2
]}

Grim, Christopher J. ^{[3
]}

Ramachandran, Padmini ^{[3
]}

Meng, Jianghong ^{[1
,2
,4
]}

机构：

[1] Univ Maryland, Joint Inst Food Safety & Appl Nutr, College Pk, MD 20742 USA

[2] Univ Maryland, Ctr Food Safety & Secur Syst, College Pk, MD 20742 USA

[3] US FDA, Ctr Food Safety & Appl Nutr, College Pk, MD USA

[4] Univ Maryland, Dept Nutr & Food Sci, College Pk, MD USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 09期

关键词：

simulated community; Oxford Nanopore sequencing; long read; shotgun metagenomics; nanopore chemistry; sequencing depth; Salmonella enterica; Pseudomonas aeruginosa;

D O I：

10.1128/mra.00586-24

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Oxford Nanopore long reads of simulated bacterial communities from fresh spinach and surface water were generated (R9.4.1+SQK-LSK109 and R10.4+SQK-LSK112; 0.5, one, and two million reads). Salmonella enterica serotype Heidelberg, Montevideo, or Typhimurium was included alone or in combination in the spinach community, while the water community harbored Pseudomonas aeruginosa.

引用

页数：4