Microbacterium humicola sp. nov., Microbacterium terrisoli sp. nov., Paenibacillus pedocola sp. nov., Paenibacillus silviterrae sp. nov., Flavobacterium terrisoli sp. nov., and Aquabacterium humicola sp. nov., isolated from soil

被引:0
作者
Lee, Hyosun [1 ]
Chaudhary, Dhiraj Kumar [2 ]
Lee, Ki-Eun [3 ]
Cha, In-Tae [3 ]
Chi, Won-Jae [3 ]
Kim, Dong- Uk [1 ]
机构
[1] Sangji Univ, Coll Sci & Engn, Dept Biol Sci, Wonju 26339, South Korea
[2] Pukyong Natl Univ, Dept Microbiol, Busan 48513, South Korea
[3] Natl Inst Biol Resources, Microorganism Resources Div, Incheon 22689, South Korea
关键词
Aquabacterium humicola sp. nov; Flavobacterium terrisoli sp. nov; Microbacterium humicola sp. nov; Microbacterium terrisoli sp. nov; Paenibacillus pedocola sp. nov; Paenibacillus silviterrae nov; EMENDED DESCRIPTION; ALGORITHM; IDENTIFICATION; SEQUENCES; PROPOSAL; ACCURATE; COLLINS; FAMILY; BASE;
D O I
10.1099/ijsem.0.006486
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Four Gram-stain-positive and two Gram-stain-negative bacterial strains, designated as W4(T), FW7(T), TW48(T), UW52(T), PT-3(T), and RJY3(T), were isolated from soil samples collected from the Republic of Korea. The 16S rRNA gene sequence analysis showed that strains W4(T) and FW7(T) belonged to the genus Microbacterium, strains TW48(T) and UW52(T) were affiliated to the genus Paenibacillus, strain PT-3(T) was related to the genus Flavobacterium, and strain RJY3(T) was associated with the genus Aquabacterium. The closest phylogenetic taxa to W4(T), FW7(T), TW48(T), UW52(T), PT-3(T), and RJY3(T) were Microbacterium bovistercoris NEAU-LLET (97.7 %), Microbacterium protaetiae DFW100M-13(T) (97.9 %), Paenibacillus auburnensis JJ-7(T) (99.6 %), Paenibacillus allorhizosphaerae JJ-447(T) (95.7 %), Flavobacterium buctense T7(T) (97.1 %), and Aquabacterium terrae S2(T) (99.5 %), respectively. Average nucleotide identity and digital DNA-DNA hybridization values between the novel strains and related reference type strains were <95.0 % and <70.0 %, respectively. The major cellular fatty acid in strains W4(T), FW7(T) TW48(T), and UW52(T) was antiso-C-15 : 0. Similarly, strain PT-3(T) revealed iso-C-15 : 0, iso-C-15 : 1 G, iso-C-17 : 0 3-OH, and iso-C-15 : 0 3-OH as its principal fatty acids. On the other hand, RJY3(T) exhibited summed feature 3 (C-16 : 1 omega 7c and/or C-16 : 1 omega 6c), C-16 : 0, summed feature 8 (C-18 : 1 omega 7c and/or C-18 : 1 omega 6c), and C-12 : 0 as its predominant fatty acids. Overall, the polyphasic taxonomic data indicated that strains W4(T), FW7(T), TW48(T), UW52(T), PT-3(T), and RJY3(T) represent novel species within the genera Microbacterium, Paenibacillus, Flavobacterium, and Aquabacterium. Accordingly, we propose the names Microbacterium humicola sp. nov., with the type strain W4(T) (=KCTC 49888(T)=NBRC 116001(T)), Microbacterium terrisoli sp. nov., with the type strain FW7(T) (=KCTC 49859(T)=NBRC 116000(T)), Paenibacillus pedocola sp. nov., with the type strain TW48(T) (=KCTC 43470(T)=NBRC 116017(T)), Paenibacillus silviterrae sp. nov., with the type strain UW52(T) (=KCTC 43477(T)=NBRC 116018(T)), Flavobacterium terrisoli sp. nov., with the type strain PT-3(T) (=KCTC 92106(T)=NBRC 116012(T)), and Aquabacterium humicola sp. nov., with the type strain RJY3(T) (=KCTC 92105(T)=NBRC 115831(T)).
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页数:18
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共 78 条
[71]   Paenibacillus taihuensis sp nova, isolated from an eutrophic lake [J].
Wu, Yu-Fan ;
Wu, Qing-Long ;
Liu, Shuang-Jiang .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :3652-3658
[72]   The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains [J].
Yarza, Pablo ;
Richter, Michael ;
Peplies, Joerg ;
Euzeby, Jean ;
Amann, Rudolf ;
Schleifer, Karl-Heinz ;
Ludwig, Wolfgang ;
Gloeckner, Frank Oliver ;
Rossello-Mora, Ramon .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2008, 31 (04) :241-250
[73]   Identification of Flavobacterium algoritolerans sp. nov. and Flavobacterium yafengii sp. nov., two novel members of the genus Flavobacterium [J].
Yin, Ce-Ce ;
Yang, Lei-Lei ;
Xin, Yu-Hua ;
Ye, Jian ;
Liu, Qing .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (10)
[74]   A large-scale evaluation of algorithms to calculate average nucleotide identity [J].
Yoon, Seok-Hwan ;
Ha, Sung-min ;
Lim, Jeongmin ;
Kwon, Soonjae ;
Chun, Jongsik .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2017, 110 (10) :1281-1286
[75]   Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies [J].
Yoon, Seok-Hwan ;
Ha, Sung-Min ;
Kwon, Soonjae ;
Lim, Jeongmin ;
Kim, Yeseul ;
Seo, Hyungseok ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (05) :1613-1617
[76]   Microbacterium agarici sp nov., Microbacterium humi sp nov and Microbacterium pseudoresistens sp nov., isolated from the base of the mushroom Agaricus blazei [J].
Young, C. -C. ;
Busse, H. -J. ;
Langer, S. ;
Chu, Jiunn-Nan ;
Schumann, P. ;
Arun, A. B. ;
Shen, Fo-Ting ;
Rekha, P. D. ;
Kaempfer, P. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 :854-860
[77]   A greedy algorithm for aligning DNA sequences [J].
Zhang, Z ;
Schwartz, S ;
Wagner, L ;
Miller, W .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2000, 7 (1-2) :203-214
[78]   A cold shock protein promotes high-temperature microbial growth through binding to diverse RNA species [J].
Zhou, Zikang ;
Tang, Hongzhi ;
Wang, Weiwei ;
Zhang, Lige ;
Su, Fei ;
Wu, Yuanting ;
Bai, Linquan ;
Li, Sicong ;
Sun, Yuhui ;
Tao, Fei ;
Xu, Ping .
CELL DISCOVERY, 2021, 7 (01)