Unraveling the Role of MYB Transcription Factors in Abiotic Stress Responses: An Integrative Approach in Eugenia uniflora L.

被引:1
作者
Filgueiras, Joao Pedro Carmo [1 ]
da Silveira, Thiago Dias [2 ]
Kulcheski, Franceli Rodrigues [3 ]
Turchetto-Zolet, Andreia Carina [1 ]
机构
[1] Univ Fed Rio Grande Sul UFRGS, Inst Biociencias, Dept Genet, Programa Pos Graduacao Genet & Biol Mol PPGBM Dept, Ave Bento Goncalves 9500,Predio 43312, BR-91501970 Porto Alegre, Brazil
[2] Univ Fed Rio Grande Sul UFRGS, Dept Biol Mol & Biotecnol, Graduacao Biotecnol, Inst Biociencias, Porto Alegre, Brazil
[3] Univ Fed Santa Catarina UFSC, Programa Pos Graduacao Biol Celular & Desenvolvime, Dept Biol Celular Embriol & Genet, Florianopolis, Brazil
关键词
Genome-wide identification; Stress response; Phylogenetics; GENOME-WIDE IDENTIFICATION; R2R3-MYB GENE FAMILY; SALT STRESS; OSMOTIC-STRESS; TOLERANCE; ARABIDOPSIS; EXPRESSION; DROUGHT; OVEREXPRESSION; ANTHOCYANIN;
D O I
10.1007/s11105-024-01489-8
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
MYB transcription factors (TF) play crucial roles in regulating gene expression and orchestrating responses to abiotic and biotic stresses in plants. MYBs were demonstrated to be involved in land plant adaptation. However, little is known about these proteins in native species from heterogeneous environments. Eugenia uniflora (Myrtaceae) is widely distributed in diverse environments within the Atlantic Forest Domain (AFD). In this work, we identified 147 MYB genes in E. uniflora using an integrative approach involving the genome, transcriptome, and phylogenetics analyses. A phylogenetic approach including MYBs from E. uniflora, Eucalyptus grandis, Arabidopsis thaliana, Solanum lycopersicum, Oryza sativa, Vitis vinifera, and Medicago truncatula allowed us to classify the EunMYB in 39 subfamilies already described. The RNA-seq data analysis unveiled the expression patterns of MYB genes under stress conditions in E. uniflora and Eucalyptus grandis. We found 50 EunMYB genes differentially expressed (DE) in E. uniflora under drought stress. In E. grandis, 11 genes were found to be DE under cold and 25 under heat stress. Integrating the expression data, phylogenetic relationships, and the available data from the literature, we highlight the potential MYBs of E. uniflora that may be acting in resistance to abiotic stress, enabling adaptation to diverse environmental conditions.
引用
收藏
页码:295 / 306
页数:12
相关论文
共 99 条
[1]   A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance [J].
Agarwal, Manu ;
Hao, Yujin ;
Kapoor, Avnish ;
Dong, Chun-Hai ;
Fujii, Hiroaki ;
Zheng, Xianwu ;
Zhu, Jian-Kang .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (49) :37636-37645
[2]   Characterization and expression analysis of P5CS (Δ1-pyrroline-5-carboxylate synthase) gene in two distinct populations of the Atlantic Forest native species Eugenia uniflora L. [J].
Anton, Debora Bublitz ;
Guzman, Frank Lino ;
Veto, Nicole Moreira ;
Krause, Felipe Augusto ;
Kulcheski, Franceli Rodrigues ;
Durand Coelho, Ana Paula ;
Duarte, Guilherme Leitao ;
Margis, Rogerio ;
Dillenburg, Lucia Rebello ;
Turchetto-Zolet, Andreia Carina .
MOLECULAR BIOLOGY REPORTS, 2020, 47 (02) :1033-1043
[3]  
Bailey T.L., 2002, Current Protocols in Bioinformatics, DOI [DOI 10.1002/0471250953.BI0204S00, 10.1002/0471250953.BI0204S00]
[4]  
Bateman A, 2002, NUCLEIC ACIDS RES, V30, P276, DOI [10.1093/nar/gkr1065, 10.1093/nar/gkp985, 10.1093/nar/gkh121]
[5]   SOG1 activator and MYB3R repressors regulate a complex DNA damage network in Arabidopsis [J].
Bourbousse, Clara ;
Vegesna, Neeraja ;
Law, Julie A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (52) :E12453-E12462
[6]   Origins and Stepwise Expansion of R2R3-MYB Transcription Factors for the Terrestrial Adaptation of Plants [J].
Chang, Xiaojun ;
Xie, Shupeng ;
Wei, Lanlan ;
Lu, Zhaolian ;
Chen, Zhong-Hua ;
Chen, Fei ;
Lai, Zhongxiong ;
Lin, Zhenguo ;
Zhang, Liangsheng .
FRONTIERS IN PLANT SCIENCE, 2020, 11
[7]   MYB Transcription Repressors Regulate Plant Secondary Metabolism [J].
Chen, Cheng ;
Zhang, Kaixuan ;
Khurshid, Muhammad ;
Li, Jinbo ;
He, Ming ;
Georgiev, Milen I. ;
Zhang, Xinquan ;
Zhou, Meiliang .
CRITICAL REVIEWS IN PLANT SCIENCES, 2019, 38 (03) :159-170
[8]   TBtools-II: A "one for all, all for one"bioinformatics platform for biological big-data mining [J].
Chen, Chengjie ;
Wu, Ya ;
Li, Jiawei ;
Wang, Xiao ;
Zeng, Zaohai ;
Xu, Jing ;
Liu, Yuanlong ;
Feng, Junting ;
Chen, Hao ;
He, Yehua ;
Xia, Rui .
MOLECULAR PLANT, 2023, 16 (11) :1733-1742
[9]   Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage [J].
Chen, Poyu ;
Takatsuka, Hirotomo ;
Takahashi, Naoki ;
Kurata, Rie ;
Fukao, Yoichiro ;
Kobayashi, Kosuke ;
Ito, Masaki ;
Umeda, Masaaki .
NATURE COMMUNICATIONS, 2017, 8
[10]   Silencing of SlMYB50 affects tolerance to drought and salt stress in tomato [J].
Chen, Yanan ;
Feng, Panpan ;
Zhang, Xianwei ;
Xie, Qiaoli ;
Chen, Guoping ;
Zhou, Shuang ;
Hu, Zongli .
PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2022, 193 :139-152