Crystal Structure of the Native Chromoprotein from Pleurotus salmoneostramineus Provides Insights into the Pigmentation Mechanism

被引:0
作者
Ihara, Makoto [1 ]
Tsuchida, Noriko [2 ]
Sumida, Marina [1 ]
Himiyama, Tomoki [3 ]
Kitayama, Takashi [1 ]
Shirasaka, Norifumi [1 ]
Fukuta, Yasuhisa [1 ]
机构
[1] Kindai Univ, Fac Agr, 3327-204 Nakamachi, Nara 6318505, Japan
[2] Saitama Med Univ, Fac Med, 38 Moroyama, Saitama 3508550, Japan
[3] Natl Inst Adv Ind Sci & Technol, 1-8-31 Midorigaoka, Ikeda, Osaka 5638577, Japan
基金
日本学术振兴会;
关键词
pigment protein; mushroom; chromophore; X-raycrystallography; Pleurotus salmoneostramineus; ANALYTICAL ULTRACENTRIFUGATION; MOLECULAR-REPLACEMENT; EXCITATION-ENERGIES; APPROXIMATION; FAMILY;
D O I
10.1021/acs.jafc.4c02951
中图分类号
S [农业科学];
学科分类号
09 ;
摘要
The pink-colored protein from the fungus Pleurotus salmoneostramineus (PsPCP) possesses unusual primary sequences with little resemblance to those of known proteins and exhibits a red color in aqueous solution. To understand the pigmentation mechanism of PsPCP, we elucidated the X-ray crystal structure of the native PsPCP. We identified a highly conjugated polyene ligand 2-dehydro-3-deoxylaetiporic acid A as a chromophore ligand, whose solution exhibits yellow. The crystal structure of PsPCP indicated that the ligand is secured in the central cavity and anchored at both termini by hydrophilic interactions and that surrounding residues show CH-pi and C-H<middle dot><middle dot><middle dot>O hydrogen bondings. Geometrical analyses of the bound ligand demonstrated that the conjugated C-C and C & boxH;C bonds exhibit similar bond distances. The result indicated enhanced electron delocalization within the conjugated CC bond system, resulting in a redshift of the chromophore ligand. The computational estimates of the UV-vis spectra support the view that the electron delocalization within the conjugated CC bonds system of the bound ligand, induced by the specific ligand geometry within a limited space of PsPCP cavity, is responsible for the red pigmentation of PsPCP. Thus, we propose that the coloring mechanism of PsPCP, which constrains the geometry of a highly conjugated polyene ligand, is a novel type of pigment chemistry.
引用
收藏
页码:17626 / 17632
页数:7
相关论文
共 39 条
[21]   REFMAC5 for the refinement of macromolecular crystal structures [J].
Murshudov, Garib N. ;
Skubak, Pavol ;
Lebedev, Andrey A. ;
Pannu, Navraj S. ;
Steiner, Roberto A. ;
Nicholls, Robert A. ;
Winn, Martyn D. ;
Long, Fei ;
Vagin, Alexei A. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2011, 67 :355-367
[22]   ZUM INDOLONPROBLEM .2. VERSUCHE ZUR DARSTELLUNG DES UNSUBSTITUIERTEN INDOLONS [J].
NEUNHOEFFER, O ;
LEHMANN, G .
CHEMISCHE BERICHTE-RECUEIL, 1961, 94 (11) :2965-2967
[23]   Structure-function relationships in heme-proteins [J].
Paoli, M ;
Marles-Wright, J ;
Smith, A .
DNA AND CELL BIOLOGY, 2002, 21 (04) :271-280
[24]   Geometries and properties of excited states in the gas phase and in solution: Theory and application of a time-dependent density functional theory polarizable continuum model [J].
Scalmani, G ;
Frisch, MJ ;
Mennucci, B ;
Tomasi, J ;
Cammi, R ;
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (09)
[25]   Crystallization and preliminary crystallographic studies of pink color chromoprotein from Pleurotus salmoneostramineus L Vass [J].
Shibata, N ;
Gohow, M ;
Inoue, T ;
Nagano, C ;
Inaba, K ;
Takekuma, H ;
Takekuma, SI ;
Yoshida, ZI ;
Kai, Y .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1997, 53 :335-336
[26]  
Shirasaka N., 2012, MUSHROOM SCI BIOTECH, V20, P141
[27]  
Shirasaka N., 2012, MUSHROOM SCI BIOTECH, V20, P147, DOI [10.24465/msb.20.3147, DOI 10.24465/MSB.20.3147]
[28]  
Shirata A., 1998, TOKIIRO HIRATAKE JSE, V67, P461
[29]   An efficient implementation of time-dependent density-functional theory for the calculation of excitation energies of large molecules [J].
Stratmann, RE ;
Scuseria, GE ;
Frisch, MJ .
JOURNAL OF CHEMICAL PHYSICS, 1998, 109 (19) :8218-8224
[30]   A NOVEL MUSHROOM PIGMENT - ISOLATION AND CHARACTERIZATION [J].
TAKEKUMA, S ;
TAKEKUMA, H ;
MATSUBARA, Y ;
INABA, K ;
YOSHIDA, Z .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (19) :8849-8850