Crystal Structure of the Native Chromoprotein from Pleurotus salmoneostramineus Provides Insights into the Pigmentation Mechanism

被引:0
作者
Ihara, Makoto [1 ]
Tsuchida, Noriko [2 ]
Sumida, Marina [1 ]
Himiyama, Tomoki [3 ]
Kitayama, Takashi [1 ]
Shirasaka, Norifumi [1 ]
Fukuta, Yasuhisa [1 ]
机构
[1] Kindai Univ, Fac Agr, 3327-204 Nakamachi, Nara 6318505, Japan
[2] Saitama Med Univ, Fac Med, 38 Moroyama, Saitama 3508550, Japan
[3] Natl Inst Adv Ind Sci & Technol, 1-8-31 Midorigaoka, Ikeda, Osaka 5638577, Japan
基金
日本学术振兴会;
关键词
pigment protein; mushroom; chromophore; X-raycrystallography; Pleurotus salmoneostramineus; ANALYTICAL ULTRACENTRIFUGATION; MOLECULAR-REPLACEMENT; EXCITATION-ENERGIES; APPROXIMATION; FAMILY;
D O I
10.1021/acs.jafc.4c02951
中图分类号
S [农业科学];
学科分类号
09 ;
摘要
The pink-colored protein from the fungus Pleurotus salmoneostramineus (PsPCP) possesses unusual primary sequences with little resemblance to those of known proteins and exhibits a red color in aqueous solution. To understand the pigmentation mechanism of PsPCP, we elucidated the X-ray crystal structure of the native PsPCP. We identified a highly conjugated polyene ligand 2-dehydro-3-deoxylaetiporic acid A as a chromophore ligand, whose solution exhibits yellow. The crystal structure of PsPCP indicated that the ligand is secured in the central cavity and anchored at both termini by hydrophilic interactions and that surrounding residues show CH-pi and C-H<middle dot><middle dot><middle dot>O hydrogen bondings. Geometrical analyses of the bound ligand demonstrated that the conjugated C-C and C & boxH;C bonds exhibit similar bond distances. The result indicated enhanced electron delocalization within the conjugated CC bond system, resulting in a redshift of the chromophore ligand. The computational estimates of the UV-vis spectra support the view that the electron delocalization within the conjugated CC bonds system of the bound ligand, induced by the specific ligand geometry within a limited space of PsPCP cavity, is responsible for the red pigmentation of PsPCP. Thus, we propose that the coloring mechanism of PsPCP, which constrains the geometry of a highly conjugated polyene ligand, is a novel type of pigment chemistry.
引用
收藏
页码:17626 / 17632
页数:7
相关论文
共 39 条
[1]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[2]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[3]   Benchmark of Simplified Time-Dependent Density Functional Theory for UV-Vis Spectral Properties of Porphyrinoids [J].
Batra, Kamal ;
Zahn, Stefan ;
Heine, Thomas .
ADVANCED THEORY AND SIMULATIONS, 2020, 3 (01)
[4]   Calculations and Publication-Quality Illustrations for Analytical Ultracentrifugation Data [J].
Brautigam, Chad A. .
ANALYTICAL ULTRACENTRIFUGATION, 2015, 562 :109-133
[5]   Molecular excitation energies to high-lying bound states from time-dependent density-functional response theory: Characterization and correction of the time-dependent local density approximation ionization threshold [J].
Casida, ME ;
Jamorski, C ;
Casida, KC ;
Salahub, DR .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (11) :4439-4449
[6]   Empirical treatment of the inductive and dispersive components of solute-solvent interactions:: the Tolvent polarizability (SP) scale [J].
Catalán, J ;
Hopf, H .
EUROPEAN JOURNAL OF ORGANIC CHEMISTRY, 2004, 2004 (22) :4694-4702
[7]   A new ONIOM implementation in Gaussian98.: Part I.: The calculation of energies, gradients, vibrational frequencies and electric field derivatives [J].
Dapprich, S ;
Komáromi, I ;
Byun, KS ;
Morokuma, K ;
Frisch, MJ .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 1999, 461 :1-21
[8]   Laetiporic acids, a family of non-carotenoid polyene pigments from fruit-bodies and liquid cultures of Laetiporus sulphureus (Polyporales, Fungi) [J].
Davoli, P ;
Mucci, A ;
Schenetti, L ;
Weber, RWS .
PHYTOCHEMISTRY, 2005, 66 (07) :817-823
[9]   Features and development of Coot [J].
Emsley, P. ;
Lohkamp, B. ;
Scott, W. G. ;
Cowtan, K. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2010, 66 :486-501
[10]   An introduction to data reduction: space-group determination, scaling and intensity statistics [J].
Evans, Philip R. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2011, 67 :282-292