Topological structures and adsorption properties of the [Fe4S4] clusters

被引:0
作者
Wang, Xi [1 ,2 ]
Chen, Libin [3 ]
Yan, Yule [1 ]
Liu, Qiman [3 ]
Zhang, Manli [3 ]
机构
[1] Natl Ctr Coal Chem Prod Qual Supervis & Inspect, Huainan 232001, Peoples R China
[2] Bur Urban Util & Landscapling Huainan Municipal, Huainan 232000, Peoples R China
[3] Huainan Normal Univ, Sch Chem & Mat Engn, Huainan 232038, Peoples R China
关键词
Fe4S4; cluster; topological structures; electronic properties; adsorption; DENSITY-FUNCTIONAL THEORY; IRON-SULFUR CLUSTER; GENETIC ALGORITHM; PHOTOELECTRON-SPECTROSCOPY; GLOBAL OPTIMIZATION; METALLOPROTEINS; AROMATICITY;
D O I
10.1088/1402-4896/ad6244
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The [Fe4S4] compositions are ubiquitous in biological systems as integral parts of the complex catalytic mechanisms as in hydrogenases and nitrogenases. The current reports about [Fe4S4] species are based on the cube-like structure framework. Here, the topological structures, stability and electronic properties of gas phase [Fe4S4](+), [Fe4S4](0) and [Fe4S4](-) are analyzed. It is found that ground state structures of these three clusters have similar cubic cages but different symmetries and spin multiplicities. The molecular dynamics simulations demonstrate that the cubic cage remains thermodynamically stable at 700 K. The density of states show that the charge state is the key to affect electronic behaviors of them even under the same structural framework. The molecular orbitals show that the LUMO orbitals are distributed throughout whole structures, showing great delocalized characteristics, especially for the anionic [Fe4S4](-), while the HOMO orbits are mainly localized in Fe-S bonds, which are also confirmed by the electron localization function analyses. After one CO molecule is adsorbed on these clusters, it prefers to locate at the Fe atoms. Moreover, the C-O bond length and vibration frequency of the [Fe4S4](-)-CO undergone a significant red shift. Our work shows that the [Fe4S4](-) may act as a potential catalyst for activating the C-O bond.
引用
收藏
页数:10
相关论文
共 50 条
  • [21] Cleavage of [4Fe-4S]-Type Clusters: Breaking the Symmetry
    Niu, Shuqiang
    Ichiye, Toshiko
    JOURNAL OF PHYSICAL CHEMISTRY A, 2009, 113 (19) : 5710 - 5717
  • [22] Influence of the charge on the volumes of nanoscale cages (carbon and boron-nitride fullerenes, Ge9z- Zintl ions, and cubic Fe4S4 clusters)
    Sabirov, Denis Sh.
    Zakirova, Albina D.
    Tukhbatullina, Alina A.
    Gubaydullin, Irek M.
    Bulgakov, Ramil G.
    RSC ADVANCES, 2013, 3 (06) : 1818 - 1824
  • [23] Functional Roles of the Aromatic Residues in the Stabilization of the [Fe4S4] Cluster in the Iro Protein from Acidithiobacillus ferrooxidans
    Zeng Jia
    Liu, Qing
    Zhang, Xiaojian
    Mo, Hongyu
    Wang, Yiping
    Chen, Qian
    Liu, Yuandong
    JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, 2010, 20 (02) : 294 - 300
  • [24] Inserting Three-Coordinate Nickel into [4Fe-4S] Clusters
    Fataftah, Majed S.
    Wilson, Daniel W. N.
    Mathe, Zachary
    Gerard, Theodore J.
    Mercado, Brandon Q.
    DeBeer, Serena
    Holland, Patrick L.
    ACS CENTRAL SCIENCE, 2024, 10 (10) : 1910 - 1919
  • [25] Asp97 is a crucial residue involved in the ligation of the [Fe4S4] cluster of IscA from Acidithiobacillus ferrooxidans
    Jiang, Huidan
    Zhang, Xiaojian
    Ai, Chenbing
    Liu, Yuandong
    Liu, Jianshe
    Qiu, Guanzhou
    Zeng, Jia
    JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, 2008, 18 (06) : 1070 - 1075
  • [26] Structures, electronic properties and adsorption mechanisms of the O2Fe3N clusters
    Zhao, Zhen
    Li, Zhi
    INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2019, 33 (19):
  • [27] DETERMINATION OF THE [FE4S4]CYS(4) CLUSTER GEOMETRY OF DESULFOVIBRIO-AFRICANUS FERREDOXIN-I BY H-1-NMR SPECTROSCOPY
    DAVY, SL
    OSBORNE, MJ
    BRETON, J
    MOORE, GR
    THOMSON, AJ
    BERTINI, I
    LUCHINAT, C
    FEBS LETTERS, 1995, 363 (1-2) : 199 - 204
  • [28] Ammonia capture by MN4 (M=Fe and Ni) clusters embedded in graphene
    Khosravi, A.
    Vessally, E.
    Oftadeh, M.
    Behjatmanesh-Ardakani, R.
    JOURNAL OF COORDINATION CHEMISTRY, 2018, 71 (21) : 3476 - 3486
  • [29] A DFT study of the NO adsorption on Pdn (n=1-4) clusters
    Lacaze-Dufaure, C.
    Roques, J.
    Mijoule, C.
    Sicilia, E.
    Russo, N.
    Alexiev, V.
    Mineva, T.
    JOURNAL OF MOLECULAR CATALYSIS A-CHEMICAL, 2011, 341 (1-2) : 28 - 34
  • [30] Structures and hydrogen adsorption of (MgCN2)n (n=1-4) clusters
    Zhou, Le
    Lu, Kun
    Gu, Xiong
    Sun, Qiang
    PHYSICS LETTERS A, 2012, 376 (6-7) : 864 - 868