Single-Cell RNA-Sequencing: Opening New Horizons for Breast Cancer Research

被引:4
作者
Xiang, Lingyan [1 ]
Rao, Jie [1 ]
Yuan, Jingping [1 ]
Xie, Ting [1 ]
Yan, Honglin [1 ]
机构
[1] Wuhan Univ, Dept Pathol, Renmin Hosp, Wuhan 430060, Peoples R China
关键词
single-cell RNA-sequencing; breast cancer; heterogeneity; tumor microenvironment; therapy; drug resistance; SEQ; TECHNOLOGIES; EXPRESSION; QUALITY; ATLAS;
D O I
10.3390/ijms25179482
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Breast cancer is the most prevalent malignant tumor among women with high heterogeneity. Traditional techniques frequently struggle to comprehensively capture the intricacy and variety of cellular states and interactions within breast cancer. As global precision medicine rapidly advances, single-cell RNA sequencing (scRNA-seq) has become a highly effective technique, revolutionizing breast cancer research by offering unprecedented insights into the cellular heterogeneity and complexity of breast cancer. This cutting-edge technology facilitates the analysis of gene expression profiles at the single-cell level, uncovering diverse cell types and states within the tumor microenvironment. By dissecting the cellular composition and transcriptional signatures of breast cancer cells, scRNA-seq provides new perspectives for understanding the mechanisms behind tumor therapy, drug resistance and metastasis in breast cancer. In this review, we summarized the working principle and workflow of scRNA-seq and emphasized the major applications and discoveries of scRNA-seq in breast cancer research, highlighting its impact on our comprehension of breast cancer biology and its potential for guiding personalized treatment strategies.
引用
收藏
页数:25
相关论文
共 113 条
[1]   Laser capture microdissection: techniques and applications in liver diseases [J].
Aguilar-Bravo, Beatriz ;
Sancho-Bru, Pau .
HEPATOLOGY INTERNATIONAL, 2019, 13 (02) :138-147
[2]   Unveiling functional heterogeneity in breast cancer multicellular tumor spheroids through single-cell RNA-seq [J].
Andres Mucino-Olmos, Erick ;
Vazquez-Jimenez, Aaron ;
Avila-Ponce de Leon, Ugo ;
Matadamas-Guzman, Meztli ;
Maldonado, Vilma ;
Lopez-Santaella, Tayde ;
Hernandez-Hernandez, Abrahan ;
Resendis-Antonio, Osbaldo .
SCIENTIFIC REPORTS, 2020, 10 (01)
[3]   Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment [J].
Azizi, Elham ;
Carr, Ambrose J. ;
Plitas, George ;
Cornish, Andrew E. ;
Konopacki, Catherine ;
Prabhakaran, Sandhya ;
Nainys, Juozas ;
Wu, Kenmin ;
Kiseliovas, Vaidotas ;
Setty, Manu ;
Choi, Kristy ;
Fromme, Rachel M. ;
Phuong Dao ;
McKenney, Peter T. ;
Wasti, Ruby C. ;
Kadaveru, Krishna ;
Mazutis, Linas ;
Rudensky, Alexander Y. ;
Pe'er, Dana .
CELL, 2018, 174 (05) :1293-+
[4]  
Bageritz J, 2019, METHODS MOL BIOL, V1979, P73, DOI 10.1007/978-1-4939-9240-9_6
[5]   Podoplanin-Expressing Macrophages Promote Lymphangiogenesis and Lymphoinvasion in Breast Cancer [J].
Bieniasz-Krzywiec, Pawel ;
Martin-Perez, Rosa ;
Ehling, Manuel ;
Garcia-Caballero, Melissa ;
Pinioti, Sotiria ;
Pretto, Samantha ;
Kroes, Roel ;
Aldeni, Chiara ;
Di Matteo, Mario ;
Prenen, Hans ;
Virginia Tribulatti, Maria ;
Campetella, Oscar ;
Smeets, Ann ;
Noel, Agnes ;
Floris, Giuseppe ;
Van Ginderachter, Jo A. ;
Mazzone, Massimiliano .
CELL METABOLISM, 2019, 30 (05) :917-936
[6]   Combating subclonal evolution of resistant cancer phenotypes [J].
Brady, Samuel W. ;
McQuerry, Jasmine A. ;
Qiao, Yi ;
Piccolo, Stephen R. ;
Shrestha, Gajendra ;
Jenkins, David F. ;
Layer, Ryan M. ;
Pedersen, Brent S. ;
Miller, Ryan H. ;
Esch, Amanda ;
Selitsky, Sara R. ;
Parker, Joel S. ;
Anderson, Layla A. ;
Dalley, Brian K. ;
Factor, Rachel E. ;
Reddy, Chakravarthy B. ;
Boltax, Jonathan P. ;
Li, Dean Y. ;
Moos, Philip J. ;
Gray, Joe W. ;
Heiser, Laura M. ;
Buys, Saundra S. ;
Cohen, Adam L. ;
Johnson, W. Evan ;
Quinlan, Aaron R. ;
Marth, Gabor ;
Werner, Theresa L. ;
Bild, Andrea H. .
NATURE COMMUNICATIONS, 2017, 8
[7]   Integrating single-cell transcriptomic data across different conditions, technologies, and species [J].
Butler, Andrew ;
Hoffman, Paul ;
Smibert, Peter ;
Papalexi, Efthymia ;
Satija, Rahul .
NATURE BIOTECHNOLOGY, 2018, 36 (05) :411-+
[8]   Cancer Cell of Origin: Spotlight on Luminal Progenitors [J].
Chaffer, Christine L. ;
Weinberg, Robert A. .
CELL STEM CELL, 2010, 7 (03) :271-272
[9]   A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell-Cell Communication [J].
Cheng, Changde ;
Chen, Wenan ;
Jin, Hongjian ;
Chen, Xiang .
CELLS, 2023, 12 (15)
[10]   Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer [J].
Chung, Woosung ;
Eum, Hye Hyeon ;
Lee, Hae-Ock ;
Lee, Kyung-Min ;
Lee, Han-Byoel ;
Kim, Kyu-Tae ;
Ryu, Han Suk ;
Kim, Sangmin ;
Lee, Jeong Eon ;
Park, Yeon Hee ;
Kan, Zhengyan ;
Han, Wonshik ;
Park, Woong-Yang .
NATURE COMMUNICATIONS, 2017, 8