Diversity and ecology of NrfA-dependent ammonifying microorganisms

被引:9
作者
Saghai, Aurelien [1 ]
Hallin, Sara [1 ]
机构
[1] Swedish Univ Agr Sci, Dept Forest Mycol & Plant Pathol, Uppsala, Sweden
基金
瑞典研究理事会;
关键词
C NITRITE REDUCTASE; DISSIMILATORY NITRATE REDUCTION; DESULFOVIBRIO-VULGARIS HILDENBOROUGH; HYBRID CLUSTER PROTEIN; CYTOCHROME-C; ESCHERICHIA-COLI; NITROUS-OXIDE; AMMONIUM DNRA; SULFUROSPIRILLUM-DELEYIANUM; WOLINELLA-SUCCINOGENES;
D O I
10.1016/j.tim.2024.02.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nitrate ammonifiers are a taxonomically diverse group of microorganisms that reduce nitrate to ammonium, which is released, and thereby contribute to the retention of nitrogen in ecosystems. Despite their importance for understanding the fate of nitrate, they remain a largely overlooked group in the nitrogen cycle. Here, we present the latest advances on free-living microorganisms using NrfA to reduce nitrite during ammonification. We describe their diversity and ecology in terrestrial and aquatic environments, as well as the environmental factors influencing the competition for nitrate with denitrifiers that reduce nitrate to gaseous nitrogen species, including the greenhouse gas nitrous oxide (N2O). We further review the capacity of ammonifiers for other redox reactions, showing that they likely play multiple roles in the cycling of elements.
引用
收藏
页码:602 / 613
页数:12
相关论文
共 100 条
[1]   Elucidating Electron Storage and Distribution within the Pentaheme Scaffold of Cytochrome c Nitrite Reductase (NrfA) [J].
Alfaro, Victor Sosa ;
Campecino, Julius ;
Tracy, Matthew ;
Elliott, Sean J. ;
Hegg, Eric L. ;
Lehnert, Nicolai .
BIOCHEMISTRY, 2021, 60 (23) :1853-1867
[2]   Multiple metabolisms constrain the anaerobic nitrite budget in the Eastern Tropical South Pacific [J].
Babbin, Andrew R. ;
Peters, Brian D. ;
Mordy, Calvin W. ;
Widner, Brittany ;
Casciotti, Karen L. ;
Ward, Bess B. .
GLOBAL BIOGEOCHEMICAL CYCLES, 2017, 31 (02) :258-271
[3]   Structure and spectroscopy of the periplasmic cytochrome c nitrite reductase from Escherichia coli [J].
Bamford, VA ;
Angove, HC ;
Seward, HE ;
Thomson, AJ ;
Cole, JA ;
Butt, JN ;
Hemmings, AM ;
Richardson, DJ .
BIOCHEMISTRY, 2002, 41 (09) :2921-2931
[4]  
Bonete Maria Jose, 2008, Saline Syst, V4, P9, DOI 10.1186/1746-1448-4-9
[5]   Simultaneous sulfate and nitrate reduction in coastal sediments [J].
Bourceau, O. M. ;
Ferdelman, T. ;
Lavik, G. ;
Mussmann, M. ;
Kuypers, M. M. M. ;
Marchant, H. K. .
ISME COMMUNICATIONS, 2023, 3 (01)
[6]   Cytochrome c nitrite reductase from the bacterium Geobacter lovleyi represents a new NrfA subclass [J].
Campecino, Julius ;
Lagishetty, Satyanarayana ;
Wawrzak, Zdzislaw ;
Alfaro, Victor Sosa ;
Lehnert, Nicolai ;
Reguera, Gemma ;
Hu, Jian ;
Hegg, Eric L. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2020, 295 (33) :11455-11465
[7]   Optimization of PCR primers to detect phylogenetically diverse nrfA genes associated with nitrite ammonification [J].
Cannon, Jordan ;
Sanford, Robert A. ;
Connor, Lynn ;
Yang, Wendy H. ;
Chee-Sanford, Joanne .
JOURNAL OF MICROBIOLOGICAL METHODS, 2019, 160 :49-59
[8]   Selective carbon sources influence the end products of microbial nitrate respiration [J].
Carlson, Hans K. ;
Lui, Lauren M. ;
Price, Morgan N. ;
Kazakov, Alexey E. ;
Carr, Alex V. ;
Kuehl, Jennifer V. ;
Owens, Trenton K. ;
Nielsen, Torben ;
Arkin, Adam P. ;
Deutschbauer, Adam M. .
ISME JOURNAL, 2020, 14 (08) :2034-2045
[9]   Global Patterns and Drivers of Soil Dissimilatory Nitrate Reduction to Ammonium [J].
Cheng, Yi ;
Elrys, Ahmed S. ;
Merwad, Abdel-Rahman M. ;
Zhang, Huimin ;
Chen, Zhaoxiong ;
Zhang, Jinbo ;
Cai, Zucong ;
Mueller, Christoph .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2022, 56 (06) :3791-3800
[10]   Global food system emissions could preclude achieving the 1.5° and 2°C climate change targets [J].
Clark, Michael A. ;
Domingo, Nina G. G. ;
Colgan, Kimberly ;
Thakrar, Sumil K. ;
Tilman, David ;
Lynch, John ;
Azevedo, Ines L. ;
Hill, Jason D. .
SCIENCE, 2020, 370 (6517) :705-+