Comprehensive peripheral blood immunoprofiling reveals five immunotypes with immunotherapy response characteristics in patients with cancer

被引:34
作者
Dyikanov, Daniiar [1 ]
Zaitsev, Aleksandr [1 ]
Vasileva, Tatiana [1 ]
Wang, Iris [1 ]
Sokolov, Arseniy A. [1 ]
Bolshakov, Evgenii S. [1 ]
Frank, Alena [1 ]
Turova, Polina [1 ]
Golubeva, Olga [1 ]
Gantseva, Anna [1 ]
Kamysheva, Anna [1 ]
Shpudeiko, Polina [1 ]
Krauz, Ilya [1 ]
Abdou, Mary [1 ]
Chasse, Madison [1 ]
Conroy, Tori [1 ]
Merriam, Nicholas R. [1 ]
Alesse, Julia E. [1 ]
English, Noel [1 ]
Shpak, Boris [1 ]
Shchetsova, Anna [1 ]
Tikhonov, Evgenii [1 ]
Filatov, Ivan [1 ]
Radko, Anastasia [1 ]
Bolshakova, Anastasiia [1 ]
Kachalova, Anastasia [1 ]
Lugovykh, Nika [1 ]
Bulahov, Andrey [1 ]
Kilina, Anastasiia [1 ]
Asanbekov, Syimyk [1 ]
Zheleznyak, Irina [1 ]
Skoptsov, Pavel [1 ]
Alekseeva, Evgenia [1 ]
Johnson, Jennifer M. [2 ]
Curry, Joseph M. [3 ]
Linnenbach, Alban J. [3 ]
South, Andrew P. [4 ]
Yang, Enjun [5 ]
Morozov, Kirill [1 ]
Terenteva, Anastasiya [1 ]
Nigmatullina, Lira [1 ]
Fastovetz, Dmitry [1 ]
Bobe, Anatoly [1 ]
Balabanian, Linda [1 ]
Nomie, Krystle [1 ]
Yong, Sheila T. [1 ]
Davitt, Christopher J. H. [1 ]
Ryabykh, Alexander [1 ]
Kudryashova, Olga [1 ]
Tazearslan, Cagdas [1 ]
机构
[1] BostonGene Corp, Waltham, MA 02453 USA
[2] Thomas Jefferson Univ, Dept Med Oncol, Philadelphia, PA USA
[3] Thomas Jefferson Univ, Dept Otolaryngol Head & Neck Surg, Philadelphia, PA USA
[4] Thomas Jefferson Univ, Dept Pharmacol Physiol & Canc Biol, Philadelphia, PA USA
[5] Parker Inst Canc Immunotherapy, San Francisco, CA USA
关键词
T-CELLS; RNA-SEQ; NIVOLUMAB; SURVIVAL; THERAPY; EXPRESSION; HEAD;
D O I
10.1016/j.ccell.2024.04.008
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
The lack of comprehensive diagnostics and consensus analytical models for evaluating the status of a patient's immune system has hindered a wider adoption of immunoprofiling for treatment monitoring and response prediction in cancer patients. To address this unmet need, we developed an immunoprofiling platform that uses multiparameter flow cytometry to characterize immune cell heterogeneity in the peripheral blood of healthy donors and patients with advanced cancers. Using unsupervised clustering, we identified five immunotypes with unique distributions of different cell types and gene expression profiles. An independent analysis of 17,800 open -source transcriptomes with the same approach corroborated these findings. Continuous immunotype-based signature scores were developed to correlate systemic immunity with patient responses to different cancer treatments, including immunotherapy, prognostically and predictively. Our approach and findings illustrate the potential utility of a simple blood test as a flexible tool for stratifying cancer patients into therapy response groups based on systemic immunoprofiling.
引用
收藏
页码:759 / 779.e12
页数:34
相关论文
共 119 条
[1]   Systemic dysfunction and plasticity of the immune macroenvironment in cancer models [J].
Allen, Breanna M. ;
Hiam, Kamir J. ;
Burnett, Cassandra E. ;
Venida, Anthony ;
DeBarge, Rachel ;
Tenvooren, Iliana ;
Marquez, Diana M. ;
Cho, Nam Woo ;
Carmi, Yaron ;
Spitzer, Matthew H. .
NATURE MEDICINE, 2020, 26 (07) :1125-+
[2]   Peripheral Blood-Based Biomarkers for Immune Checkpoint Inhibitors [J].
An, Ho Jung ;
Chon, Hong Jae ;
Kim, Chan .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (17)
[3]   Directing Traffic: How to Effectively Drive T Cells into Tumors [J].
Anandappa, Annabelle J. ;
Wu, Catherine J. ;
Ott, Patrick A. .
CANCER DISCOVERY, 2020, 10 (02) :185-197
[4]   Immune Cell Profiling of Peripheral Blood as Signature for Response During Checkpoint Inhibition Across Cancer Types [J].
Araujo B. de Lima, Vinicius ;
Hansen, Morten ;
Spanggaard, Iben ;
Rohrberg, Kristoffer ;
Reker Hadrup, Sine ;
Lassen, Ulrik ;
Svane, Inge Marie .
FRONTIERS IN ONCOLOGY, 2021, 11
[5]   Meta-Analysis of PD-L1 Expression As a Predictor of Survival After Checkpoint Blockade [J].
Arfe, Andrea ;
Fell, Geoffrey ;
Alexander, Brian ;
Awad, Mark M. ;
Rodig, Scott J. ;
Trippa, Lorenzo ;
Schoenfeld, Jonathan D. .
JCO PRECISION ONCOLOGY, 2020, 4 :1196-1206
[6]   Peripheral Blood Monocyte Abundance Predicts Outcomes in Patients with Breast Cancer [J].
Axelrod, Margaret L. ;
Wang, Yu ;
Xu, Yaomin ;
Sun, Xiaopeng ;
Bejan, Cosmin A. ;
Gonzalez-Ericsson, Paula I. ;
Nunnery, Sara ;
Bergman, Riley E. ;
Donaldson, Joshua ;
Guerrero-Zotano, Angel L. ;
Massa, Chiara ;
Seliger, Barbara ;
Sanders, Melinda ;
Mayer, Ingrid A. ;
Balko, Justin M. .
CANCER RESEARCH COMMUNICATIONS, 2022, 2 (05) :286-292
[7]   Conserved pan-cancer microenvironment subtypes predict response to immunotherapy [J].
Bagaev, Alexander ;
Kotlov, Nikita ;
Nomie, Krystle ;
Svekolkin, Viktor ;
Gafurov, Azamat ;
Isaeva, Olga ;
Osokin, Nikita ;
Kozlov, Ivan ;
Frenkel, Felix ;
Gancharova, Olga ;
Almog, Nava ;
Tsiper, Maria ;
Ataullakhanov, Ravshan ;
Fowler, Nathan .
CANCER CELL, 2021, 39 (06) :845-+
[8]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[9]   Patterns of Peripheral Blood B-Cell Subtypes Are Associated With Treatment Response in Patients Treated With Immune Checkpoint Inhibitors: A Prospective Longitudinal Pan-Cancer Study [J].
Barth, Dominik A. ;
Stanzer, Stefanie ;
Spiegelberg, Jasmin A. ;
Bauernhofer, Thomas ;
Absenger, Gudrun ;
Szkandera, Joanna ;
Gerger, Armin ;
Smolle, Maria A. ;
Hutterer, Georg C. ;
Ahyai, Sascha A. ;
Madl, Tobias ;
Posch, Florian ;
Riedl, Jakob M. ;
Klec, Christiane ;
Jost, Philipp J. ;
Kargl, Julia ;
Stradner, Martin H. ;
Pichler, Martin .
FRONTIERS IN IMMUNOLOGY, 2022, 13
[10]   MiXCR: software for comprehensive adaptive immunity profiling [J].
Bolotin, Dmitriy A. ;
Poslavsky, Stanislav ;
Mitrophanov, Igor ;
Shugay, Mikhail ;
Mamedov, Ilgar Z. ;
Putintseva, Ekaterina V. ;
Chudakov, Dmitriy M. .
NATURE METHODS, 2015, 12 (05) :380-381