Functional benefit of CRISPR-Cas9-induced allele deletion for RYR1 dominant mutation

被引:2
作者
Beaufils, Mathilde [1 ]
Melka, Margaux [1 ]
Brocard, Julie [1 ]
Benoit, Clement [2 ]
Debbah, Nagi [1 ,2 ,3 ]
Mamchaoui, Kamel [4 ]
Romero, Norma B. [5 ]
Dalmas-Laurent, Anne Frederique [6 ]
Quijano-Roy, Susana [7 ]
Faure, Julien
Rendu, John [1 ]
Marty, Isabelle [1 ]
机构
[1] Univ Grenoble Alpes, Grenoble Inst Neurosci, CHU Grenoble Alpes, Inserm,U1216, F-38000 Grenoble, France
[2] Univ Grenoble Alpes, TIMC, CNRS, UMR5525, F-38000 Grenoble, France
[3] Univ Grenoble Alpes, Dept Pharmacochim Mol, CNRS, UMR 5063, F-38400 St Martin Dheres, France
[4] Sorbonne Univ, Inst Myol, Ctr Rech Myol, INSERM, F-75000 Paris, France
[5] Sorbonne Univ, Pitie Salpetriere Hosp, Inst Myol, Neuromuscular Morphol Unit, F-75000 Paris, France
[6] Lille Univ Hosp, MH Unit, F-59000 Lille, France
[7] Univ Paris Saclay, Raymond Poincare Hosp, AP HP, Child Neurol & ICU Dept,Neuromuscular Unit NEIDF, F-92380 Garches, France
关键词
RYANODINE-RECEPTOR; MALIGNANT HYPERTHERMIA; MYOPATHY; DISEASE;
D O I
10.1016/j.omtn.2024.102259
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
More than 700 pathogenic or probably pathogenic variations have been identi fi ed in the RYR1 gene causing various myopathies collectively known as " RYR1-related myopathies. " There is no treatment for these myopathies, and gene therapy stands out as one of the most promising approaches. In the context of a dominant form of central core disease due to a RYR1 mutation, we aimed at showing the functional bene fi t of inactivating speci fi cally the mutated RYR1 allele by guiding CRISPR-Cas9 cleavages onto frequent single-nucleotide polymorphisms (SNPs) segregating on the same chromosome. Whole-genome sequencing was used to pinpoint SNPs localized on the mutant RYR1 allele and identi fi ed speci fi c CRISPR-Cas9 guide RNAs. Lentiviruses encoding these guide RNAs and the SpCas9 nuclease were used to transduce immortalized patient myoblasts, inducing the speci fi c deletion of the mutant RYR1 allele. The ef fi ciency of the deletion was assessed at DNA and RNA levels, and at the functional level after monitoring calcium release induced by the stimulation of the RyR1-channel. This study provides in cellulo proof of concept regarding the bene fi ts of mutant RYR1 allele deletion, in the case of a dominant RYR1 mutation, from both a molecular and functional perspective, and could apply potentially to 20% of all patients with a RYR1 mutation.
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页数:15
相关论文
共 41 条
[1]   Genotype-phenotype correlations in recessive RYR1-related myopathies [J].
Amburgey, Kimberly ;
Bailey, Angela ;
Hwang, Jean H. ;
Tarnopolsky, Mark A. ;
Bonnemann, Carsten G. ;
Medne, Livija ;
Mathews, Katherine D. ;
Collins, James ;
Daube, Jasper R. ;
Wellman, Gregory P. ;
Callaghan, Brian ;
Clarke, Nigel F. ;
Dowling, James J. .
ORPHANET JOURNAL OF RARE DISEASES, 2013, 8
[2]  
[Anonymous], 2020, Schrodinger and DeLano
[3]   Genome editing with CRISPR-Cas nucleases, base editors, transposases and prime editors [J].
Anzalone, Andrew V. ;
Koblan, Luke W. ;
Liu, David R. .
NATURE BIOTECHNOLOGY, 2020, 38 (07) :824-844
[4]  
Beaufils M., 2022, J. Vis. Exp., V16, P184
[5]   Therapies for RYR1-Related Myopathies: Where We Stand and the Perspec-tives [J].
Beaufils, Mathilde ;
Travard, Lauriane ;
Rendu, John ;
Marty, Isabelle .
CURRENT PHARMACEUTICAL DESIGN, 2022, 28 (01) :15-25
[6]   Protein Data Bank: the single global archive for 3D macromolecular structure data [J].
Burley, Stephen K. ;
Berman, Helen M. ;
Bhikadiya, Charmi ;
Bi, Chunxiao ;
Chen, Li ;
Di Costanzo, Luigi ;
Christie, Cole ;
Duarte, Jose M. ;
Dutta, Shuchismita ;
Feng, Zukang ;
Ghosh, Sutapa ;
Goodsell, David S. ;
Green, Rachel Kramer ;
Guranovic, Vladimir ;
Guzenko, Dmytro ;
Hudson, Brian P. ;
Liang, Yuhe ;
Lowe, Robert ;
Peisach, Ezra ;
Periskova, Irina ;
Randle, Chris ;
Rose, Alexander ;
Sekharan, Monica ;
Shao, Chenghua ;
Tao, Yi-Ping ;
Valasatava, Yana ;
Voigt, Maria ;
Westbrook, John ;
Young, Jasmine ;
Zardecki, Christine ;
Zhuravleva, Marina ;
Kurisu, Genji ;
Nakamura, Haruki ;
Kengaku, Yumiko ;
Cho, Hasumi ;
Sato, Junko ;
Kim, Ju Yaen ;
Ikegawa, Yasuyo ;
Nakagawa, Atsushi ;
Yamashita, Reiko ;
Kudou, Takahiro ;
Bekker, Gert-Jan ;
Suzuki, Hirofumi ;
Iwata, Takeshi ;
Yokochi, Masashi ;
Kobayashi, Naohiro ;
Fujiwara, Toshimichi ;
Velankar, Sameer ;
Kleywegt, Gerard J. ;
Anyango, Stephen .
NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D520-D528
[7]  
Cacheux Marine, 2015, J Neuromuscul Dis, V2, P421
[8]   Precise correction of Duchenne muscular dystrophy exon deletion mutations by base and prime editing [J].
Chemello, F. ;
Chai, A. C. ;
Li, H. ;
Rodriguez-Caycedo, C. ;
Sanchez-Ortiz, E. ;
Atmanli, A. ;
Mireault, A. A. ;
Liu, N. ;
Bassel-Duby, R. ;
Olson, E. N. .
SCIENCE ADVANCES, 2021, 7 (18)
[9]   Huntingtin regulates calcium fluxes in skeletal muscle [J].
Chivet, Mathilde ;
McCluskey, Maximilian ;
Nicot, Anne Sophie ;
Brocard, Julie ;
Beaufils, Mathilde ;
Giovannini, Diane ;
Giannesini, Benoit ;
Poreau, Brice ;
Brocard, Jacques ;
Humbert, Sandrine ;
Saudou, Frederic ;
Faure, Julien ;
Marty, Isabelle .
JOURNAL OF GENERAL PHYSIOLOGY, 2022, 155 (01)
[10]   Mutation-Independent Allele-Specific Editing by CRISPR-Cas9, a Novel Approach to Treat Autosomal Dominant Disease [J].
Christie, Kathleen A. ;
Robertson, Louise J. ;
Conway, Caroline ;
Blighe, Kevin ;
DeDionisio, Larry A. ;
Chao-Shern, Connie ;
Kowalczyk, Amanda M. ;
Marshall, John ;
Turnbull, Doug ;
Nesbit, M. Andrew ;
Moore, C. B. Tara .
MOLECULAR THERAPY, 2020, 28 (08) :1846-1857