Plant RNA-binding proteins: Phase separation dynamics and functional mechanisms underlying plant development and stress responses

被引:10
作者
Fan, Sheng [1 ]
Zhang, Yu [1 ]
Zhu, Shaobo [1 ]
Shen, Lisha [1 ,2 ]
机构
[1] Natl Univ Singapore, Temasek Life Sci Lab, 1 Res Link, Singapore 117604, Singapore
[2] Natl Univ Singapore, Dept Biol Sci, 14 Sci Dr 4, Singapore 117543, Singapore
基金
新加坡国家研究基金会;
关键词
RNA-binding proteins; phase separation; biomolecular condensates; RNA metabolism; development; stress resilience; MESSENGER-RNA; PROCESSING BODIES; ANTISENSE TRANSCRIPTS; ADENOSINE METHYLASE; IDENTIFY PROTEINS; YTH DOMAIN; GRANULES; PROMOTES; REVEALS; M(6)A;
D O I
10.1016/j.molp.2024.02.016
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RNA -binding proteins (RBPs) accompany RNA from synthesis to decay, mediating every aspect of RNA metabolism and impacting diverse cellular and developmental processes in eukaryotes. Many RBPs undergo phase separation along with their bound RNA to form and function in dynamic membraneless biomolecular condensates for spatiotemporal coordination or regulation of RNA metabolism. Increasing evidence suggests that phase -separating RBPs with RNA -binding domains and intrinsically disordered regions play important roles in plant development and stress adaptation. Here, we summarize the current knowledge about how dynamic partitioning of RBPs into condensates controls plant development and enables sensing of experimental changes to confer growth plasticity under stress conditions, with a focus on the dynamics and functional mechanisms of RBP-rich nuclear condensates and cytoplasmic granules in mediating RNA metabolism. We also discuss roles of multiple factors, such as environmental signals, protein modifications, and N 6 -methyladenosine RNA methylation, in modulating the phase separation behaviors of RBPs, and highlight the prospects and challenges for future research on phase -separating RBPs in crops.
引用
收藏
页码:531 / 551
页数:21
相关论文
共 37 条
[31]   Non-coding RNAs and transposable elements in plant genomes: emergence, regulatory mechanisms and roles in plant development and stress responses [J].
Hou, Jinna ;
Lu, Dandan ;
Mason, Annaliese S. ;
Li, Baoquan ;
Xiao, Meili ;
An, Sufang ;
Fu, Donghui .
PLANTA, 2019, 250 (01) :23-40
[32]   MYB proteins: Versatile regulators of plant development, stress responses, and secondary metabolite biosynthetic pathways [J].
Bhatt, Preshita A. ;
Gurav, Tanuja P. ;
Kondhare, Kirtikumar R. ;
Giri, Ashok P. .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2025, 288
[33]   The evolutionarily conserved multifunctional glycine-rich RNA-binding proteins play key roles in development and stress adaptation [J].
Ciuzan, Oana ;
Hancock, John ;
Pamfil, Doru ;
Wilson, Ian ;
Ladomery, Michael .
PHYSIOLOGIA PLANTARUM, 2015, 153 (01) :1-11
[34]   RBPLight: a computational tool for discovery of plant-specific RNA-binding proteins using light gradient boosting machine and ensemble of evolutionary features [J].
Pradhan, Upendra K. ;
Meher, Prabina K. ;
Naha, Sanchita ;
Pal, Soumen ;
Gupta, Sagar ;
Gupta, Ajit ;
Parsad, Rajender .
BRIEFINGS IN FUNCTIONAL GENOMICS, 2023, 22 (05) :401-410
[35]   Role of Germin-Like Proteins (GLPs) in Biotic and Abiotic Stress Responses in Major Crops: A Review on Plant Defense Mechanisms and Stress Tolerance [J].
Govindan, Ganesan ;
Sandhiya, K. R. ;
Alphonse, Vinoth ;
Somasundram, Suji .
PLANT MOLECULAR BIOLOGY REPORTER, 2024, 42 (03) :450-468
[36]   Molecular dynamics of FMRP and other RNA-binding proteins in MEG-01 differentiation: the role of mRNP complexes in non-neuronal development [J].
McCoy, M. ;
Poliquin-Duchesneau, D. ;
Corbin, F. .
BIOCHEMISTRY AND CELL BIOLOGY, 2016, 94 (06) :597-608
[37]   Structural and Biochemical Analysis of the Hordeum vulgare L. HvGR-RBP1 Protein, a Glycine-Rich RNA-Binding Protein Involved in the Regulation of Barley Plant Development and Stress Response [J].
Tripet, Brian P. ;
Mason, Katelyn E. ;
Eilers, Brian J. ;
Burns, Jennifer ;
Powell, Paul ;
Fischer, Andreas M. ;
Copie, Valerie .
BIOCHEMISTRY, 2014, 53 (50) :7945-7960