Objective This study aimed to prove that the effect of diode laser 650-nm irradiation to the expression of vascular endothelial growth factor (VEGF)-A and transforming growth factor (TGF)-beta 1 plays important roles in dental pulp-regulating cell proliferation, differentiation, and revascularization. Materials and Methods The research was performed by randomized posttest only control group design using Rattus norvegicus . A total of 48 samples were provided and divided into eight groups of 6 samples each with a random-sample allocation. Each group were prepared, and perforation of maxillary first molar were done. In control groups (groups 1-4), glass ionomer cement (GIC) was used to restore the teeth, while in laser groups (groups 5-8), the teeth were irradiated with diode laser 650nm for 40seconds before application of GIC. Half of the groups (groups 1, 2, 5, and 6) were necropsied in 7 days, and the rest (groups 3, 4, 7, and 8) were necropsied in 14 days. Immunohistochemistry (IHC) evaluation were implemented to check the expression of both VEGF-A and TGF-beta 1. Statistical Analysis Both data of VEGF-A and TGF-beta 1 expression were analyzed using a one-way ANOVA ( alpha =0.05) with SPSS statistical software. Results The study showed that the diode laser 650-nm irradiation increased expression of VEGF-A and TGF-beta 1, and there was a significant difference between diode laser and control group on VEGF-A expression ( p =0.001) and TGF- beta 1 ( p =0.000) on days 7 and 14. Conclusion Diode laser 650nm with 40-second irradiation time shows increment from day 7 to day 14 reflecting increase in pulp healing by modulating VEGF-A and TGF-beta 1 expression since days 7 to 14.