Pyroptosis-Related Genes as Diagnostic Markers in Chronic Obstructive Pulmonary Disease and Its Correlation with Immune Infiltration

被引:2
作者
Shu, Hong-Mei [1 ]
Lin, Chang-Qing [1 ]
He, Bei [1 ]
Wang, Wang [1 ]
Wang, Ling [1 ]
Wu, Ting [1 ]
He, Hai-Juan [1 ]
Wang, Hui-Juan [1 ]
Zhou, He-Ping [2 ]
Ding, Guo-Zheng [1 ]
机构
[1] Anqing Municipal Hosp, Dept Pulm & Crit Care Med, Anqing, Anhui, Peoples R China
[2] Anqing Municipal Hosp, Neurol Dept, Anqing, Anhui, Peoples R China
关键词
chronic obstructive pulmonary disease; pyroptosis; gene; biomarkers; immune Infiltration; CELL-DEATH; EXPRESSION; RECEPTORS; SMOKING; PATHWAY; NOD1;
D O I
10.2147/COPD.S438686
中图分类号
R56 [呼吸系及胸部疾病];
学科分类号
摘要
Background: Chronic obstructive pulmonary disease (COPD) stands as a predominant cause of global morbidity and mortality. This study aims to elucidate the relationship between pyroptosis-related genes (PRGs) and COPD diagnosis in the context of immune infiltration, ultimately proposing a PRG-based diagnostic model for predicting COPD outcomes. Methods: Clinical data and PRGs of COPD patients were sourced from the GEO database. The "ConsensusClusterPlus" package was employed to generate molecular subtypes derived from PRGs that were identified through differential expression analysis and LASSO Cox analysis. A diagnostic signature including eight genes (CASP4, CASP5, ELANE, GPX4, NLRP1, GSDME, NOD1and IL18) was also constructed. Immune cell infiltration calculated by the ESTIMATE score, Stroma scores and Immune scores were also compared on the basis of pyroptosis-related molecular subtypes and the risk signature. We finally used qRT - PCR to detect the expression levels of eight genes in COPD patient and normal. Results: The diagnostic model, anchored on eight PRGs, underwent validation with an independent experimental cohort. The area under the receiver operating characteristic (ROC) curves (AUC) for the diagnostic model showcased values of 0.809, 0.765, and 0.956 for the GSE76925, GSE8545, and GSE5058 datasets, respectively. Distinct expression patterns and clinical attributes of PRGs were observed between the comparative groups, with functional analysis underscoring a disparity in immune-related functions between them. Conclusion: In this study, we developed a potential as diagnostic biomarkers for COPD and have a significant role in modulating the immune response. Such insights pave the way for novel diagnostic and therapeutic strategies for COPD.
引用
收藏
页码:1491 / 1513
页数:23
相关论文
共 69 条
[1]   Variability in small airway epithelial gene expression among normal smokers [J].
Ammous, Zeinab ;
Hackett, Neil R. ;
Butler, Marcus W. ;
Raman, Tina ;
Dolgalev, Igor ;
O'Connor, Timothy P. ;
Harvey, Ben-Gary ;
Crystal, Ronald G. .
CHEST, 2008, 133 (06) :1344-1353
[2]   Pyroptosis: host cell death and inflammation [J].
Bergsbaken, Tessa ;
Fink, Susan L. ;
Cookson, Brad T. .
NATURE REVIEWS MICROBIOLOGY, 2009, 7 (02) :99-109
[3]   The Gene Ontology Resource: 20 years and still GOing strong [J].
Carbon, S. ;
Douglass, E. ;
Dunn, N. ;
Good, B. ;
Harris, N. L. ;
Lewis, S. E. ;
Mungall, C. J. ;
Basu, S. ;
Chisholm, R. L. ;
Dodson, R. J. ;
Hartline, E. ;
Fey, P. ;
Thomas, P. D. ;
Albou, L. P. ;
Ebert, D. ;
Kesling, M. J. ;
Mi, H. ;
Muruganujian, A. ;
Huang, X. ;
Poudel, S. ;
Mushayahama, T. ;
Hu, J. C. ;
LaBonte, S. A. ;
Siegele, D. A. ;
Antonazzo, G. ;
Attrill, H. ;
Brown, N. H. ;
Fexova, S. ;
Garapati, P. ;
Jones, T. E. M. ;
Marygold, S. J. ;
Millburn, G. H. ;
Rey, A. J. ;
Trovisco, V. ;
dos Santos, G. ;
Emmert, D. B. ;
Falls, K. ;
Zhou, P. ;
Goodman, J. L. ;
Strelets, V. B. ;
Thurmond, J. ;
Courtot, M. ;
Osumi-Sutherland, D. ;
Parkinson, H. ;
Roncaglia, P. ;
Acencio, M. L. ;
Kuiper, M. ;
Laegreid, A. ;
Logie, C. ;
Lovering, R. C. .
NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D330-D338
[4]  
Carlson Marc, Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chiphgu133plus2)
[5]   A bacterial phospholipid phosphatase inhibits host pyroptosis by hijacking ubiquitin [J].
Chai, Qiyao ;
Yu, Shanshan ;
Zhong, Yanzhao ;
Lu, Zhe ;
Qiu, Changgen ;
Yu, Yang ;
Zhang, Xinwen ;
Zhang, Yong ;
Lei, Zehui ;
Qiang, Lihua ;
Li, Bing-Xi ;
Pang, Yu ;
Qiu, Xiao-Bo ;
Wang, Jing ;
Liu, Cui Hua .
SCIENCE, 2022, 378 (6616) :153-+
[6]   Predicting the prognosis of glioma by pyroptosis-related signature [J].
Chao, Bo ;
Jiang, Fenjun ;
Bai, Huiru ;
Meng, Peipei ;
Wang, Lu ;
Wang, Fei .
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2022, 26 (01) :133-143
[7]  
Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12
[8]   A pyroptosis nanotuner for cancer therapy [J].
Chen, Binlong ;
Yan, Yue ;
Yang, Ye ;
Cao, Guang ;
Wang, Xiao ;
Wang, Yaoqi ;
Wan, Fangjie ;
Yin, Qingqing ;
Wang, Zenghui ;
Li, Yunfei ;
Wang, Letong ;
Xu, Bo ;
You, Fuping ;
Zhang, Qiang ;
Wang, Yiguang .
NATURE NANOTECHNOLOGY, 2022, 17 (07) :788-+
[9]   Pyroptosis is driven by non-selective gasdermin-D pore and its morphology is different from MLKL channel-mediated necroptosis [J].
Chen, Xin ;
He, Wan-ting ;
Hu, Lichen ;
Li, Jingxian ;
Fang, Yuan ;
Wang, Xin ;
Xu, Xiaozheng ;
Wang, Zhuo ;
Huang, Kai ;
Han, Jiahuai .
CELL RESEARCH, 2016, 26 (09) :1007-1020
[10]   miRDB: an online database for prediction of functional microRNA targets [J].
Chen, Yuhao ;
Wang, Xiaowei .
NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) :D127-D131