Electrochemical platform for detecting Escherichia coli bacteria using machine learning methods

被引:7
作者
Aliev, Timur A. [1 ]
Lavrentev, Filipp, V [1 ]
Dyakonov, Alexandr, V [1 ]
Diveev, Daniil A. [1 ]
Shilovskikh, Vladimir V. [1 ,2 ]
Skorb, Ekaterina, V [1 ]
机构
[1] ITMO Univ, Infochem Sci Ctr, 9 Lomonosova St, St Petersburg 191002, Russia
[2] St Petersburg State Univ, Univ Skaya Embankment 7-9, St Petersburg 199034, Russia
关键词
Machine learning; Hydrogels; Bacteria; Electrochemical platform; eGaIn;
D O I
10.1016/j.bios.2024.116377
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
We present an electrochemical platform designed to reduce time of Escherichia coli bacteria detection from 24 to 48-h to 30 min. The presented approach is based on a system which includes gallium -indium (eGaIn) alloy to provide conductivity and a hydrogel system to preserve bacteria and their metabolic species during the analysis. The work is dedicated to accurate and fast detection of Escherichia coli bacteria in different environments with the supply of machine learning methods. Electrochemical data obtained during the analysis is processed via multilayer perceptron model to identify i.e. predict bacterial concentration in the samples. The performed approach provides the effectiveness of bacteria identification in the range of 10 2 -10 9 colony forming units per ml with the average accuracy of 97%. The proposed bioelectrochemical system combined with machine learning model is prospective for food analysis, agriculture, biomedicine.
引用
收藏
页数:7
相关论文
共 57 条
[1]   Nanoparticle immuno-fluorescent probes as a method for detection of viable E. coli O157:H7 [J].
Al-Awwal, Nasruddeen ;
Masjedi, Mehdi ;
El-Dweik, Majed ;
Anderson, Stephen H. ;
Ansari, Jamshid .
JOURNAL OF MICROBIOLOGICAL METHODS, 2022, 193
[2]   Efficient Machine Learning for Big Data: A Review [J].
Al-Jarrah, Omar Y. ;
Yoo, Paul D. ;
Muhaidat, Sami ;
Karagiannidis, George K. ;
Taha, Kamal .
BIG DATA RESEARCH, 2015, 2 (03) :87-93
[3]   Electrochemical Sensor to Detect Antibiotics in Milk Based on Machine Learning Algorithms [J].
Aliev, Timur A. ;
Belyaev, Vadim E. ;
Pomytkina, Anastasiya V. ;
Nesterov, Pavel V. ;
Shityakov, Sergey ;
Sadovnichii, Roman V. ;
Novikov, Alexander S. ;
Orlova, Olga Yu. ;
Masalovich, Maria S. ;
Skorb, Ekaterina V. .
ACS APPLIED MATERIALS & INTERFACES, 2023, 15 (44) :52010-52020
[4]   A Highly Sensitive Impedimetric DNA Biosensor Based on Hollow Silica Microspheres for Label-Free Determination of E. coli [J].
Ariffin, Eda Yuhana ;
Heng, Lee Yook ;
Tan, Ling Ling ;
Abd Karim, Nurul Huda ;
Hasbullah, Siti Aishah .
SENSORS, 2020, 20 (05)
[5]   Metabolic network modeling of microbial communities [J].
Biggs, Matthew B. ;
Medlock, Gregory L. ;
Kolling, Glynis L. ;
Papin, Jason A. .
WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 2015, 7 (05) :317-334
[6]   Simultaneous Detection of Four Main Foodborne Pathogens in Ready-to-Eat Food by Using a Simple and Rapid Multiplex PCR (mPCR) Assay [J].
Boukharouba, Aya ;
Gonzalez, Ana ;
Garcia-Ferrus, Miguel ;
Ferrus, Maria Antonia ;
Botella, Salut .
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2022, 19 (03)
[7]   Introducing Ionic and/or Hydrogen Bonds into the SAM//Ga2O3 Top-Interface of AgTS/S(CH2)nT//Ga2O3/EGaIn Junctions [J].
Bowers, Carleen M. ;
Liao, Kung-Ching ;
Yoon, Hyo Jae ;
Rappoport, Dmitrij ;
Baghbanzadeh, Mostafa ;
Simeone, Felice C. ;
Whitesides, George M. .
NANO LETTERS, 2014, 14 (06) :3521-3526
[8]   The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humans [J].
Burgaya, Judit ;
Marin, Julie ;
Royer, Guilhem ;
Condamine, Benedicte ;
Gachet, Benoit ;
Clermont, Olivier ;
Jaureguy, Francoise ;
Burdet, Charles ;
Lefort, Agnes ;
de Lastours, Victoire ;
Denamur, Erick ;
Galardini, Marco ;
Blanquart, Francois .
PLOS GENETICS, 2023, 19 (08)
[9]   Indirect immunofluorescence detection of E. coli O157:H7 with fluorescent silica nanoparticles [J].
Chen, Ze-Zhong ;
Cai, Li ;
Chen, Min-Yan ;
Lin, Yi ;
Pang, Dai-Wen ;
Tang, Hong-Wu .
BIOSENSORS & BIOELECTRONICS, 2015, 66 :95-102
[10]   Microfluidic electronics [J].
Cheng, Shi ;
Wu, Zhigang .
LAB ON A CHIP, 2012, 12 (16) :2782-2791