Cancer treatment comes to age: from one-size-fits-all to nextgeneration sequencing (NGS) technologies

被引:2
作者
Parvizpour, Sepideh [1 ,2 ]
Beyrampour-Basmenj, Hanieh [2 ]
Razmara, Jafar [3 ]
Farhadi, Farhad [4 ]
Shamsir, Mohd Shahir [5 ]
机构
[1] Tabriz Univ Med Sci, Biomed Inst, Res Ctr Pharmaceut Nanotechnol, Tabriz, Iran
[2] Tabriz Univ Med Sci, Sch Adv Med Sci, Dept Med Biotechnol, Tabriz, Iran
[3] Univ Tabriz, Fac Math Stat & Comp Sci, Dept Comp Sci, Tabriz, Iran
[4] Tabriz Univ Med Sci, Food & Drug Adm, Tabriz, Iran
[5] Univ Teknol Malaysia, Fac Sci, Bioinformat Res Grp, Johor Baharu, Malaysia
关键词
Cancer; Next-generation sequencing; One-size-fits-all medicine; Precision medicine; Personalized medicine; Stratified medicine; PRECISION MEDICINE; PERSONALIZED MEDICINE; GENERATION; COLLEGE; ONCOLOGY; PROJECT; FUTURE; EXOME; DNA;
D O I
10.34172/bi.2023.29957
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Cancer is one of the leading causes of death worldwide and one of the greatest challenges in extending life expectancy. The paradigm of onesize -fits -all medicine has already given way to the stratification of patients by disease subtypes, clinical characteristics, and biomarkers (stratified medicine). The introduction of next -generation sequencing (NGS) in clinical oncology has made it possible to tailor cancer patient therapy to their molecular profiles. NGS is expected to lead the transition to precision medicine (PM), where the right therapeutic approach is chosen for each patient based on their characteristics and mutations. Here, we highlight how the NGS technology facilitates cancer treatment. In this regard, first, precision medicine and NGS technology are reviewed, and then, the NGS revolution in precision medicine is described. In the sequel, the role of NGS in oncology and the existing limitations are discussed. The available databases and bioinformatics tools and online servers used in NGS data analysis are also reviewed. The review ends with concluding remarks.
引用
收藏
页数:11
相关论文
共 64 条
  • [1] The Molecular Taxonomy of Primary Prostate Cancer
    Abeshouse, Adam
    Ahn, Jaeil
    Akbani, Rehan
    Ally, Adrian
    Amin, Samirkumar
    Andry, Christopher D.
    Annala, Matti
    Aprikian, Armen
    Armenia, Joshua
    Arora, Arshi
    Auman, J. Todd
    Balasundaram, Miruna
    Balu, Saianand
    Barbieri, Christopher E.
    Bauer, Thomas
    Benz, Christopher C.
    Bergeron, Alain
    Beroukhim, Rameen
    Berrios, Mario
    Bivol, Adrian
    Bodenheimer, Tom
    Boice, Lori
    Bootwalla, Moiz S.
    dos Reis, Rodolfo Borges
    Boutros, Paul C.
    Bowen, Jay
    Bowlby, Reanne
    Boyd, Jeffrey
    Bradley, Robert K.
    Breggia, Anne
    Brimo, Fadi
    Bristow, Christopher A.
    Brooks, Denise
    Broom, Bradley M.
    Bryce, Alan H.
    Bubley, Glenn
    Burks, Eric
    Butterfield, Yaron S. N.
    Button, Michael
    Canes, David
    Carlotti, Carlos G.
    Carlsen, Rebecca
    Carmel, Michel
    Carroll, Peter R.
    Carter, Scott L.
    Cartun, Richard
    Carver, Brett S.
    Chan, June M.
    Chang, Matthew T.
    Chen, Yu
    [J]. CELL, 2015, 163 (04) : 1011 - 1025
  • [2] Effect of expanded genomic testing in lung adenocarcinoma (LUCA) on survival benefit: The Lung Cancer Mutation Consortium II (LCMC II) experience.
    Aisner, Dara
    Sholl, Lynette M.
    Berry, Lynne D.
    Haura, Eric B.
    Ramalingam, Suresh S.
    Glisson, Bonnie S.
    Socinski, Mark A.
    Waqar, Saiama Naheed
    Garon, Edward B.
    Cetnar, Jeremy Paul
    Politi, Katerina A.
    Schiller, Joan
    Rossi, Michael R.
    Chen, Heidi
    Minna, John D.
    Wistuba, Ignacio Ivan
    Johnson, Bruce E.
    Kris, Mark G.
    Bunn, Paul A.
    Kwiatkowski, David J.
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2016, 34 (15)
  • [3] AACR Project GENIE: Powering Precision Medicine through an International Consortium
    Andre, Fabrice
    Arnedos, Monica
    Baras, Alexander S.
    Baselga, Jose
    Bedard, Philippe L.
    Berger, Michael F.
    Bierkens, Mariska
    Calvo, Fabien
    Cerami, Ethan
    Chakravarty, Debyani
    Dang, Kristen K.
    Davidson, Nancy E.
    Del Vecchio, Fitz Catherine
    Dogan, Semih
    DuBois, Raymond N.
    Ducar, Matthew D.
    Futreal, P. Andrew
    Gao Jianjiong
    Garcia, Francisco
    Gardos, Stu
    Gocke, Christopher D.
    Gross, Benjamin E.
    Guinney, Justin
    Heins, Zachary J.
    Hintzen, Stephanie
    Horlings, Hugo
    Hudecek, Jan
    Hyman, David M.
    Kamel-Reid, Suzanne
    Kandoth, Cyriac
    Kinyua, Walter
    Kumari, Priti
    Kundra, Ritika
    Ladanyi, Marc
    Lefebvre, Celine
    LeNoue-Newton, Michele L.
    Lepisto, Eva M.
    Levy, Mia A.
    Lindeman, Neal, I
    Lindsay, James
    Liu, David
    Lu Zhibin
    MacConaill, Laura E.
    Ian, Maurer
    Maxwell, David S.
    Meijer, Gerrit A.
    Meric-Bernstam, Funda
    Micheel, Christine M.
    Miller, Clinton
    Mills, Gordon
    [J]. CANCER DISCOVERY, 2017, 7 (08) : 818 - 831
  • [4] Challenges in the introduction of next-generation sequencing (NGS) for diagnostics of myeloid malignancies into clinical routine use
    Bacher, Ulrike
    Shumilov, Evgenii
    Flach, Johanna
    Porret, Naomi
    Joncourt, Raphael
    Wiedemann, Gertrud
    Fiedler, Martin
    Novak, Urban
    Amstutz, Ursula
    Pabst, Thomas
    [J]. BLOOD CANCER JOURNAL, 2018, 8
  • [5] Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics
    Baichoo, Shakuntala
    Souilmi, Yassine
    Panji, Sumir
    Botha, Gerrit
    Meintjes, Ayton
    Hazelhurst, Scott
    Bendou, Hocine
    de Beste, Eugene
    Mpangase, Phelelani T.
    Souiai, Oussema
    Alghali, Mustafa
    Yi, Long
    O'Connor, Brian D.
    Crusoe, Michael
    Armstrong, Don
    Aron, Shaun
    Joubert, Fourie
    Ahmed, Azza E.
    Mbiyavanga, Mamana
    van Heusden, Peter
    Magosi, Lerato E.
    Zermeno, Jennie
    Mainzer, Liudmila Sergeevna
    Fadlelmola, Faisal M.
    Jongeneel, C. Victor
    Mulder, Nicola
    [J]. BMC BIOINFORMATICS, 2018, 19
  • [6] Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response
    Beltran, Himisha
    Eng, Kenneth
    Mosquera, Juan Miguel
    Sigaras, Alexandros
    Romanel, Alessandro
    Rennert, Hanna
    Kossai, Myriam
    Pauli, Chantal
    Faltas, Bishoy
    Fontugne, Jacqueline
    Park, Kyung
    Banfelder, Jason
    Prandi, Davide
    Madhukar, Neel
    Zhang, Tuo
    Padilla, Jessica
    Greco, Noah
    McNary, Terra J.
    Herrscher, Erick
    Wilkes, David
    MacDonald, Theresa Y.
    Xue, Hui
    Vacic, Vladimir
    Emde, Anne-Katrin
    Oschwald, Dayna
    Tan, Adrian Y.
    Chen, Zhengming
    Collins, Colin
    Gleave, Martin E.
    Wang, Yuzhuo
    Chakravarty, Dimple
    Schiffman, Marc
    Kim, Robert
    Campagne, Fabien
    Robinson, Brian D.
    Nanus, David M.
    Tagawa, Scott T.
    Xiang, Jenny Z.
    Smogorzewska, Agata
    Demichelis, Francesca
    Rickman, David S.
    Sboner, Andrea
    Elemento, Olivier
    Rubin, Mark A.
    [J]. JAMA ONCOLOGY, 2015, 1 (04) : 466 - 474
  • [7] The Multifaceted Activities of AMPK in Tumor Progression-Why the "One Size Fits All" Definition Does Not Fit at All?
    Bonini, Marcelo G.
    Gantner, Benjamin N.
    [J]. IUBMB LIFE, 2013, 65 (11) : 889 - 896
  • [8] Experience with precision genomics and tumor board, indicates frequent target identification, but barriers to delivery
    Bryce, Alan H.
    Egan, Jan B.
    Borad, Mitesh J.
    Stewart, A. Keith
    Nowakowski, Grzegorz S.
    Chanan-Khan, Asher
    Patnaik, Mrinal M.
    Ansell, Stephen M.
    Banck, Michaela S.
    Robinson, Steven I.
    Mansfield, Aaron S.
    Klee, Eric W.
    Oliver, Gavin R.
    McCormick, Jennifer B.
    Huneke, Norine E.
    Tagtow, Colleen M.
    Jenkins, Robert B.
    Rumilla, Kandelaria M.
    Kerr, Sarah E.
    Kocher, Jean-Pierre A.
    Beck, Scott A.
    Fernandez-Zapico, Martin E.
    Farrugia, Gianrico
    Lazaridis, Konstantinos N.
    McWilliams, Robert R.
    [J]. ONCOTARGET, 2017, 8 (16) : 27145 - 27154
  • [9] Next generation sequencing technology: Advances and applications
    Buermans, H. P. J.
    den Dunnen, J. T.
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, 2014, 1842 (10): : 1932 - 1941
  • [10] Unbiased Next-Generation Sequencing and New Pathogen Discovery: Undeniable Advantages and Still-Existing Drawbacks
    Calistri, Arianna
    Palu, Giorgio
    [J]. CLINICAL INFECTIOUS DISEASES, 2015, 60 (06) : 889 - 891