A comprehensive investigation of (E)-2,4-Dimethyl-6-(((2-(Phenylthio) phenyl)imino)methyl)phenol (2PTALD): Synthesis, crystal structure, and computational insights with molecular dynamic simulations

被引:1
|
作者
Kumar, Manoj [1 ]
Ahmad, Seraj [1 ]
Reeda, V. S. Jeba [2 ]
Arora, Himanshu [3 ]
Shahid, Mudassar [4 ]
Muthu, S. [5 ]
Siddiqui, Nazia [6 ]
Ali, Akram [1 ]
Javed, Saleem [7 ]
机构
[1] Univ Allahabad, CMP Coll, Dept Chem, Prayagraj 211002, UP, India
[2] Womens Christian Coll, Dept Phys, Nagercoil 629001, Tamil Nadu, India
[3] Univ Allahabad, Dept Chem, Allahabad 211002, UP, India
[4] King Saud Univ, Coll Pharm, Dept Pharmaceut, Riyadh 11451, Saudi Arabia
[5] Aringnar Anna Govt Arts Coll, Dept Phys, Cheyyar 604407, India
[6] Dayalbagh Educ Inst, Dept Chem, Agra 282005, UP, India
[7] Jamia Millia Islamia, Dept Chem, Delhi 110025, India
关键词
Molecular docking; Molecular dynamic simulation; Hirshfeld Analysis; DFT; NMR; UV; -Vis; SCHIFF-BASE LIGANDS; METAL-COMPLEXES; SPECTROSCOPIC CHARACTERIZATION; SPECTRAL CHARACTERIZATION; ELECTRON LOCALIZATION; POSSIBLE DESCRIPTOR; CU(II) COMPLEXES; FORCE-FIELD; CD(II); ZN(II);
D O I
10.1016/j.molstruc.2024.138761
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The titled compound (E)-2,4-Dimethyl-6-(((2-(Phenylthio)phenyl)imino)methyl)phenol (2PTALD) was synthesized followed by crystallization and characterized with NMR, UV and FTIR analysis. The crystal structure of 2PTALD revealed molecular geometry and compared with theoretical results and found comparable. Based on further calculations on the optimized structure - vibrational spectra, electronic characteristics and NMR spectra compared with experimental findings which given a very consistent match. MEP, ELF and thermodynamic parameters are given idea of reactivity and stability. The HOMO & LUMO found energies signifying a significant charge transfer inside the molecule. The molecular docking of 2PTALD was done with three most suitable protein with high values of binding energies. Dynamic simulations were performed using an 8W4S protein target, and analysed interaction of ligand with protein in details. Hirshfeld surface analysis offered a comprehensive visualization of intermolecular associates in the crystal structure of 2PTALD. Overall, study presents a comprehensive investigation of Schiff base ligand 2PTALD, combining experimental and computational approaches to characterize its structure, properties, and potential applications.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Spectra, Electronic structure, Biological activities and Molecular docking investigation on methyl (2E)-2-{[N-(2-formylphenyl)-4-methyl benzene sulfonamido] methyl}-3-(naphthalen-1-yl) prop-2-enoate: an experimental and computational approach
    Vetrivelan, V.
    MATERIALS TODAY-PROCEEDINGS, 2019, 8 : 402 - 411
  • [42] Crystal structure of bis{2-(tert-butyl)-6-((E)-((4-((E)-1-(methoxyimino)ethyl)phenyl)imino)methyl)phenolato-κ2 N,O}zinc(II), C40H46N4O4Zn
    Zhao, Ji-Xing
    Wu, Lei-Fang
    Chen, Da-Qun
    ZEITSCHRIFT FUR KRISTALLOGRAPHIE-NEW CRYSTAL STRUCTURES, 2022, 237 (04): : 667 - 669
  • [43] Synthesis, crystal structure analysis, spectral investigations, DFT computations, Biological activities and molecular docking of methyl(2E)-2-{[N-(2-formylphenyl)(4-methylbenzene) sulfonamido] methyl}-3-(4-fluorophenyl)prop-2-enoate, a potential bioactive agent
    Murugavel, S.
    Velan, V. Vetri
    Kannan, Damodharan
    Bakthadoss, Manickam
    JOURNAL OF MOLECULAR STRUCTURE, 2016, 1108 : 150 - 167
  • [44] Selective N-allylation via SN2' reaction: Synthesis, characterization, crystal structure, theoretical and biological studies of Ethyl (E)-2-(4-aminobenzene-1-sulphonylimino-thiazol-3-yl-methyl)-3-phenyl acrylate
    Banumathi, Palanisamy
    Rajasingh, Paramasivan
    JOURNAL OF MOLECULAR STRUCTURE, 2022, 1269
  • [45] Synthesis, molecular structure, spectroscopic investigations and computational study of a potential molecular switch of 2-([1,1’-biphenyl]-4-yl)-2-methyl-6-(4-nitrophenyl)-4-phenyl-1,3 diazabicyclo [3.1.0]hex-3-ene
    AYOUB KANAANI
    DAVOOD AJLOO
    HAMZEH KIYANI
    FRESHTE SHAHERI
    MAJID AMIRI
    Journal of Chemical Sciences, 2016, 128 : 1211 - 1221
  • [46] Synthesis, crystal structure, and DFT study of (E)-N2,N2-dimethyl-6-styryl-1,3,5-triazine-2,4-diamine and (E)-N-(4-(dimethylamino)-6-styryl-1,3,5-triazin-2-yl) acetamide
    Geng, Yiding
    Zhao, Mingxia
    Xu, Yongfang
    Cao, Xue
    Hu, Xiaoxue
    Gong, Yixia
    MOLECULAR CRYSTALS AND LIQUID CRYSTALS, 2024, 768 (01) : 159 - 169
  • [47] Synthesis, molecular structure, spectroscopic investigations and computational study of a potential molecular switch of 2-([1,1'-biphenyl]-4-yl)-2-methyl-6-(4-nitrophenyl)-4-phenyl-1,3 diazabicyclo [3.1.0]hex-3-ene
    Kanaani, Ayoub
    Ajloo, Davood
    Kiyani, Hamzeh
    Shaheri, Freshte
    Amiri, Majid
    JOURNAL OF CHEMICAL SCIENCES, 2016, 128 (08) : 1211 - 1221
  • [48] Synthesis, characterization, spectroscopy, X-ray structure and gaussian hybrid computational investigation of (-)-(S)-1-[2-(benzenesulfonamido)-3-phenylpropanoyl]-4-[(4-methyl)phenyl]thiosemicarbazide
    Kanmazalp, Sibel Demir
    Basaran, Eyup
    Karakucuk-Iyidogan, Aysegul
    Oruc-Emre, Emine Elcin
    Sen, Fatih
    Dege, Necmi
    PHOSPHORUS SULFUR AND SILICON AND THE RELATED ELEMENTS, 2018, 193 (10) : 675 - 684
  • [49] N-[2-[(3-Chlorophenyl)amino]-phenyl]-3-(difluoromethyl)-1-methyl-1H-pyrazole-4-carboxamide: Synthesis, Crystal Structure, Molecular Docking and Biological Activities
    Zhang, Aigui
    Yang, Yihua
    Yue, Ying
    Tao, Ke
    Hou, Taiping
    Jin, Hong
    CHEMISTRY & BIODIVERSITY, 2019, 16 (07)
  • [50] Synthesis, crystal structure, DFT, Hirshfeld surface analysis, energy framework, docking and molecular dynamic simulations of (E)-4-(4-methylbenzyl)-6-styrylpyridazin-3(2H)-one as anticancer agent
    El Kalai, Fouad
    cinar, Emine Berrin
    Sert, Yusuf
    Alhaji Isa, Mustafa
    Lai, Chin-Hung
    Buba, Fatimah
    Dege, Necmi
    Benchat, Noureddine
    Karrouchi, Khalid
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2023, 41 (21) : 11578 - 11597