A fully sequenced collection of homozygous EMS mutants for forward and reverse genetic screens in Arabidopsis thaliana

被引:0
|
作者
Carrere, Sebastien [1 ]
Routaboul, Jean-Marc [1 ]
Savourat, Pauline [2 ]
Bellenot, Caroline [1 ]
Lopez, Hernan [3 ]
Sahoo, Amruta [3 ]
Monnens, Thomas Quiroz [1 ]
Ricou, Anthony [2 ]
Camilleri, Christine [2 ]
Declerck, Nathalie [4 ]
Laufs, Patrick [2 ]
Mercier, Raphael [3 ]
Noel, Laurent D. [1 ]
机构
[1] Univ Toulouse, LIPME, INRAE, CNRS,UMR 0441 2598, Castanet Tolosan, France
[2] Univ Paris Saclay, Inst Jean Pierre Bourgin Plant Sci IJPB, INRAE, AgroParisTech, F-78000 Versailles, France
[3] Max Planck Inst Plant Breeding Res, Dept Chromosome Biol, Carl Von Linne Weg 10, Cologne, Germany
[4] Univ Montpellier, CBS, CNRS, INSERM,UMR5048 1054, Montpellier, France
来源
PLANT JOURNAL | 2024年 / 119卷 / 06期
关键词
Arabidopsis thaliana; genome sequence; EMS mutant; TILLING; ZAR1; CUC; HEI10; genetic screen; T-DNA; GENOME; PATHOGENICITY; DISCOVERY; ALIGNMENT; ENCODES; PROTEIN; ROLES;
D O I
10.1111/tpj.16954
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Genetic screens are powerful tools for biological research and are one of the reasons for the success of the thale cress Arabidopsis thaliana as a research model. Here, we describe the whole-genome sequencing of 871 Arabidopsis lines from the Homozygous EMS Mutant (HEM) collection as a novel resource for forward and reverse genetics. With an average 576 high-confidence mutations per HEM line, over three independent mutations altering protein sequences are found on average per gene in the collection. Pilot reverse genetics experiments on reproductive, developmental, immune and physiological traits confirmed the efficacy of the tool for identifying both null, knockdown and gain-of-function alleles. The possibility of conducting subtle repeated phenotyping and the immediate availability of the mutations will empower forward genetic approaches. The sequence resource is searchable with the ATHEM web interface (), and the biological material is distributed by the Versailles Arabidopsis Stock Center.
引用
收藏
页码:3015 / 3026
页数:12
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