Evolution of glucuronoxylan side chain variability in vascular plants and the compensatory adaptations of cell wall-degrading hydrolases

被引:11
作者
Yu, Li [1 ]
Wilson, Louis F. L. [1 ]
Terrett, Oliver M. [1 ]
Wurman-Rodrich, Joel [1 ]
Lyczakowski, Jan J. [1 ,2 ]
Yu, Xiaolan [1 ]
Krogh, Kristian B. R. M. [3 ]
Dupree, Paul [1 ]
机构
[1] Univ Cambridge, Dept Biochem, Hopkins Bldg, Downing Site, Tennis Court Rd, Cambridge CB2 1QW, England
[2] Jagiellonian Univ, Fac Biochem Biophys & Biotechnol, Dept Plant Biotechnol, Gronostajowa 7, PL-30387 Krakow, Poland
[3] Novozymes AS, Krogshojvej 36, DK-2880 Bagsvaerd, Denmark
基金
英国生物技术与生命科学研究理事会; “创新英国”项目;
关键词
cell wall; evolution; glycosyltransferase; neofunctionalisation; XAPT; xylan; xylanase; MULTIPLE SEQUENCE ALIGNMENT; CD-HIT; PROTEIN; CELLULOSE; XYLAN; HEMICELLULOSE; SUBSTITUTION; XYLOGLUCAN; PATTERN; LIGNIN;
D O I
10.1111/nph.19957
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Polysaccharide structural complexity not only influences cell wall strength and extensibility but also hinders pathogenic and biotechnological attempts to saccharify the wall. In certain species and tissues, glucuronic acid side groups on xylan exhibit arabinopyranose or galactose decorations whose genetic and evolutionary basis is completely unknown, impeding efforts to understand their function and engineer wall digestibility. Genetics and polysaccharide profiling were used to identify the responsible loci in Arabidopsis and Eucalyptus from proposed candidates, while phylogenies uncovered a shared evolutionary origin. GH30-family endo-glucuronoxylanase activities were analysed by electrophoresis, and their differing specificities were rationalised by phylogeny and structural analysis. The newly identified xylan arabinopyranosyltransferases comprise an overlooked subfamily in the GT47-A family of Golgi glycosyltransferases, previously assumed to comprise mainly xyloglucan galactosyltransferases, highlighting an unanticipated adaptation of both donor and acceptor specificities. Further neofunctionalisation has produced a Myrtaceae-specific xylan galactosyltransferase. Simultaneously, GH30 endo-glucuronoxylanases have convergently adapted to overcome these decorations, suggesting a role for these structures in defence. The differential expression of glucuronoxylan-modifying genes across Eucalyptus tissues, however, hints at further functions. Our results demonstrate the rapid adaptability of biosynthetic and degradative carbohydrate-active enzyme activities, providing insight into plant-pathogen interactions and facilitating plant cell wall biotechnological utilisation.
引用
收藏
页码:1024 / 1040
页数:17
相关论文
共 74 条
[11]   Floral dip:: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana [J].
Clough, SJ ;
Bent, AF .
PLANT JOURNAL, 1998, 16 (06) :735-743
[12]   Xylan Is Critical for Proper Bundling and Alignment of Cellulose Microfibrils in Plant Secondary Cell Walls [J].
Crowe, Jacob D. ;
Hao, Pengchao ;
Pattathil, Sivakumar ;
Pan, Henry ;
Ding, Shi-You ;
Hodge, David B. ;
Jensen, Jacob Kruger .
FRONTIERS IN PLANT SCIENCE, 2021, 12
[13]   ProtTest 3: fast selection of best-fit models of protein evolution [J].
Darriba, Diego ;
Taboada, Guillermo L. ;
Doallo, Ramon ;
Posada, David .
BIOINFORMATICS, 2011, 27 (08) :1164-1165
[14]   STRUCTURE OF PLANT-CELL WALLS .11. GLUCURONOARABINOXYLAN, A 2ND HEMICELLULOSE IN THE PRIMARY-CELL WALLS OF SUSPENSION-CULTURED SYCAMORE CELLS [J].
DARVILL, JE ;
MCNEIL, M ;
DARVILL, AG ;
ALBERSHEIM, P .
PLANT PHYSIOLOGY, 1980, 66 (06) :1135-1139
[15]   The carbohydrate-active enzyme database: functions and literature [J].
Drula, Elodie ;
Garron, Marie-Line ;
Dogan, Suzan ;
Lombard, Vincent ;
Henrissat, Bernard ;
Terrapon, Nicolas .
NUCLEIC ACIDS RESEARCH, 2022, 50 (D1) :D571-D577
[16]   Accelerated Profile HMM Searches [J].
Eddy, Sean R. .
PLOS COMPUTATIONAL BIOLOGY, 2011, 7 (10)
[17]   MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797
[18]   Characterization of an acetylated heteroxylan from Eucalyptus globulus Labill [J].
Evtuguin, DV ;
Tomás, JL ;
Silva, AMS ;
Neto, CP .
CARBOHYDRATE RESEARCH, 2003, 338 (07) :597-604
[19]   A Brief and Informationally Rich Naming System for Oligosaccharide Motifs of Heteroxylans Found in Plant Cell Walls [J].
Faure, Regis ;
Courtin, Christophe M. ;
Delcour, Jan A. ;
Dumon, Claire ;
Faulds, Craig B. ;
Fincher, Geoffrey B. ;
Fort, Sebastien ;
Fry, Stephen C. ;
Halila, Sami ;
Kabel, Mirjam A. ;
Pouvreau, Laurice ;
Quemener, Bernard ;
Rivet, Alain ;
Saulnier, Luc ;
Schols, Henk A. ;
Driguez, Hugues ;
O'Donohue, Michael J. .
AUSTRALIAN JOURNAL OF CHEMISTRY, 2009, 62 (06) :533-537
[20]   CD-HIT: accelerated for clustering the next-generation sequencing data [J].
Fu, Limin ;
Niu, Beifang ;
Zhu, Zhengwei ;
Wu, Sitao ;
Li, Weizhong .
BIOINFORMATICS, 2012, 28 (23) :3150-3152