Complete and circularized genome sequences of five nitrogen-fixing Bradyrhizobium sp. strains isolated from root nodules of peanut, Arachis hypogaea, cultivated in Tunisia

被引：1

作者：

Bouznif, Besma ^{[1
,2
,3
,4
]}

Boukherissa, Amira ^{[1
,2
]}

Jaszczyszyn, Yan ^{[1
]}

Mars, Mohamed ^{[3
]}

Timchenko, Tatiana ^{[1
]}

Shykoff, Jacqui A. ^{[2
]}

Alunni, Benoit ^{[1
,5
]}

机构：

[1] Univ Paris Saclay, Inst Integrat Biol Cell I2BC, CEA, CNRS, Gif Sur Yvette, France

[2] AgroParisTech Univ Paris Saclay, IDEEV Lab Ecol Systemat & Evolut, CNRS, Gif sur Yvette, France

[3] Fac Sci, Res Unit Biodivers & Valorizat Arid Areas Bioresou, Gabes, Tunisia

[4] Univ Picardie Jules Verne, UMRt BioEcoAgro 1158 INRAE, BIOPI, Amiens, France

[5] Univ Paris Saclay, Inst Jean Pierre Bourgin IJPB, INRAE, AgroParisTech, Versailles, France

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 06期

关键词：

symbiosis; nitrogen fixation; Bradyrhizobium; peanut; Tunisia;

D O I：

10.1128/mra.01078-23

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

This manuscript reports the complete and circularized Oxford Nanopore Technologies (ONT) long read-based genome sequences of five nitrogen-fixing symbionts belonging to the genus Bradyrhizobium, isolated from root nodules of peanut (Arachis hypogaea) grown on soil samples collected from Tunisia.

引用

页数：4

共 17 条

[1] Draft Genome Sequences of Nitrogen-Fixing Bradyrhizobia Isolated from Root Nodules of Peanut, Arachis hypogaea, Cultivated in Southern Tunisia [J].

Bouznif, Besma ;

Alunni, Benoit ;

Mars, Mohamed ;

Shykoff, Jacqui A. ;

Timchenko, Tatiana ;

Rodriguez de la Vega, Ricardo C. .

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (29)

[2] NanoPack2: population-scale evaluation of long-read sequencing data [J].

De Coster, Wouter ;

Rademakers, Rosa .

BIOINFORMATICS, 2023, 39 (05)

[3] Circlator: automated circularization of genome assemblies using long sequencing reads [J].

Hunt, Martin ;

De Silva, Nishadi ;

Otto, Thomas D. ;

Parkhill, Julian ;

Keane, Jacqueline A. ;

Harris, Simon R. .

GENOME BIOLOGY, 2015, 16

[4] Prodigal: prokaryotic gene recognition and translation initiation site identification [J].

Hyatt, Doug ;

Chen, Gwo-Liang ;

LoCascio, Philip F. ;

Land, Miriam L. ;

Larimer, Frank W. ;

Hauser, Loren J. .

BMC BIOINFORMATICS, 2010, 11

[5] Phylogenetically diverse group of native bacterial symbionts isolated from root nodules of groundnut (Arachis hypogaea L.) in South Africa [J].

Jaiswal, Sanjay K. ;

Msimbira, Levini A. ;

Dakora, Felix D. .

SYSTEMATIC AND APPLIED MICROBIOLOGY, 2017, 40 (04) :215-226

[6] Assembly of long, error-prone reads using repeat graphs [J].

Kolmogorov, Mikhail ;

Yuan, Jeffrey ;

Lin, Yu ;

Pevzner, Pavel A. .

NATURE BIOTECHNOLOGY, 2019, 37 (05) :540-+

[7] RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation [J].

Li, Wenjun ;

O'Neill, Kathleen R. ;

Haft, Daniel H. ;

DiCuccio, Michael ;

Chetvernin, Vyacheslav ;

Badretdin, Azat ;

Coulouris, George ;

Chitsaz, Farideh ;

Derbyshire, Myra K. ;

Durkin, A. Scott ;

Gonzales, Noreen R. ;

Gwadz, Marc ;

Lanczycki, Christopher J. ;

Song, James S. ;

Thanki, Narmada ;

Wang, Jiyao ;

Yamashita, Roxanne A. ;

Yang, Mingzhang ;

Zheng, Chanjuan ;

Marchler-Bauer, Aron ;

Thibaud-Nissen, Francoise .

NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D1020-D1028

[8]

Lisa M., 2017, My Research Software

[9] The Impacts of Domestication and Agricultural Practices on Legume Nutrient Acquisition Through Symbiosis With Rhizobia and Arbuscular Mycorrhizal Fungi [J].

Liu, Ailin ;

Ku, Yee-Shan ;

Contador, Carolina A. ;

Lam, Hon-Ming .

FRONTIERS IN GENETICS, 2020, 11

[10] Phenotypic and phylogenetic characterization of native peanut Bradyrhizobium isolates obtained from Cordoba, Argentina [J].

Munoz, Vanina ;

Ibanez, Fernando ;

Laura Tonelli, Maria ;

Valetti, Lucio ;

Soledad Anzuay, Maria ;

Fabra, Adriana .

SYSTEMATIC AND APPLIED MICROBIOLOGY, 2011, 34 (06) :446-452

← 1 2 →