On the use of residual dipolar couplings in multi-state structure calculation of two-domain proteins

被引:1
作者
Born, Alexandra [1 ]
Henen, Morkos A. [1 ,2 ]
Nichols, Parker J. [1 ]
Vogeli, Beat [1 ,3 ]
机构
[1] Univ Colorado Anschutz Med Campus, Dept Biochem & Mol Genet, 12801 East 17th Ave, Aurora, CO 80045 USA
[2] Mansoura Univ, Fac Pharm, Mansoura 35516, Egypt
[3] Univ Colorado Denver, Dept Biochem & Mol Genet, Res Ctr 1 South,Room 9103,12801 East 17th Ave, Aurora, CO 80045 USA
关键词
RDC; Residual dipolar coupling; Two-domain protein; Multi-state structure; NMR; BIOMOLECULES; RELAXATION; ORIENTATION; DYNAMICS; MOBILITY; MEDIA; PIN1;
D O I
10.1016/j.mrl.2021.10.003
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Residual dipolar couplings (RDCs) are powerful nuclear magnetic resonance (NMR) probes for the structure calculation of biomacromolecules. Typically, an alignment tensor that defines the orientation of the entire molecule relative to the magnetic field is determined either before refinement of individual bond vectors or simultaneously with this refine- ment. For single-domain proteins this approach works well since all bond vectors can be described within the same coordinate frame, which is given by the alignment tensor. However, novel approaches are sought after for systems where no universal alignment tensor can be used. Here, we present an approach that can be applied to two-domain proteins that enables the calculation of multiple states within each domain as well as with respect to the relative positions of the two domains. (c) 2021 The Authors. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co. Ltd. This is an open access article under the CC BY-NC-ND license (http:// creativecommons.org/licenses/by-nc-nd/4.0/).
引用
收藏
页码:61 / 68
页数:8
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