Marinobacter azerbaijanicus sp. nov., a moderately halophilic bacterium from Urmia Lake, Iran

被引:0
作者
Sanchez-Porro, Cristina [1 ]
Aghdam, Elnaz Mehdizadeh [2 ,3 ]
Montazersaheb, Soheila [2 ]
Tarhriz, Vahideh [4 ]
Kazemi, Elham [3 ]
Amoozegar, Mohammad Ali [5 ,6 ]
Ventosa, Antonio [1 ]
Hejazi, Mohammad Saeid [2 ,3 ]
机构
[1] Univ Seville, Fac Pharm, Dept Microbiol & Parasitol, Seville, Spain
[2] Tabriz Univ Med Sci, Biomed Inst, Mol Med Res Ctr, Tabriz, Iran
[3] Tabriz Univ Med Sci, Fac Pharm, Dept Pharmaceut Biotechnol, Tabriz, Iran
[4] Louisiana State Univ, Hlth Sci Ctr, Cardiovasc Ctr Excellence, New Orleans, LA USA
[5] Univ Tehran, Sch Biol, Dept Microbiol, Extremophiles Lab, Tehran, Iran
[6] Univ Tehran, Coll Sci, Ctr Excellence Phylogeny Living Organisms, Tehran, Iran
关键词
comparative genomics; halophilic bacteria; Marinobacter; new taxa; taxonomy; Urmia Lake; GENOME; ALGORITHM; SEQUENCES; SOFTWARE; STANDARD; QUALITY; TREE; TOOL;
D O I
10.1099/ijsem.0.006308
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel moderately halophilic, Gram- stain- negative and facultatively anaerobic bacterium, designated as strain TBZ242 T , was isolated from water of Urmia Lake in the Azerbaijan region of Iran. The cells were found to be rod- shaped and motile by a single polar flagellum, producing circular and yellowish colonies. The strain could grow in the presence of 0.5-10 % (w/v) NaCl (optimum, 2.5-5 %). The temperature and pH ranges for growth were 15-45 degrees C (optimum 30 degrees C) and pH 7.0-11.0 (optimum pH 8.0) on marine agar. The 16S rRNA gene sequence analysis revealed that strain TBZ242 T belonged to the genus Marinobacter , showing the highest similarities to Marinobacter algicola DG893 T (98.8 %), Marinobacter vulgaris F01 T (98.8 %), Marinobacter salarius R9SW1 T (98.5 %), Marinobacter panjinensis PJ-16 T (98.4 %), Marinobacter orientalis W62 T (98.0 %) and Marinobacter denitrificans JB2H27 T (98.0 %). The 16S rRNA and core- genome phylogenetic trees showed that strain TBZ242 T formed a distinct branch, closely related to a subclade accommodating M. vulgaris , M. orientalis , M. panjinensis , M. denitrificans , M. algicola , M. salarius and M. iranensis , within the genus Marinobacter . Average nucleotide identity and digital DNA-DNA hybridization values between strain TBZ242 T and the type strains of the related species of Marinobacter were <= 85.0 and 28.6 %, respectively, confirming that strain TBZ242 T represents a distinct species. The major cellular fatty acids of strain TBZ242 T were C 16:0 and C 16:1 omega 7 c /C 16: 1 omega 6 c and the quinone was ubiquinone Q- 9. The genomic DNA G+C content of strain TBZ242 T is 57.2 mol%. Based on phenotypic, chemotaxonomic and genomic data, strain TBZ242 T represents a novel species within the genus Marinobacter , for which the name Marinobacter azerbaijanicus sp. nov. is proposed. The type strain is TBZ242 T (= CECT 30649 T = IBRC- M 11466 T ). Genomic fragment recruitment analysis showed that this species prefers aquatic saline environments with intermediate salinities, being detected on metagenomic databases of Lake Meyghan (Iran) with 5 and 18 % salinity, respectively.
引用
收藏
页数:12
相关论文
共 64 条
[41]   Marinobacter salarius sp nov and Marinobacter similis sp nov., Isolated from Sea Water [J].
Ng, Hooi Jun ;
Lopez-Perez, Mario ;
Webb, Hayden K. ;
Gomez, Daniela ;
Sawabe, Tomoo ;
Ryan, Jason ;
Vyssotski, Mikhail ;
Bizet, Chantal ;
Malherbe, Francois ;
Mikhailov, Valery V. ;
Crawford, Russell J. ;
Ivanova, Elena P. .
PLOS ONE, 2014, 9 (09)
[42]   Marinobacter caseinilyticus sp. nov., Isolated from Saline Soil [J].
Nie, Yanfang ;
Su, Xin ;
Wu, Dildar ;
Zhang, Ran ;
Wang, Ruijun ;
Zhao, Zhe ;
Xamxidin, Maripat ;
Sun, Cong ;
Wu, Min .
CURRENT MICROBIOLOGY, 2021, 78 (03) :1045-1052
[43]   A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life [J].
Parks, Donovan H. ;
Chuvochina, Maria ;
Waite, David W. ;
Rinke, Christian ;
Skarshewski, Adam ;
Chaumeil, Pierre-Alain ;
Hugenholtz, Philip .
NATURE BIOTECHNOLOGY, 2018, 36 (10) :996-+
[44]   CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].
Parks, Donovan H. ;
Imelfort, Michael ;
Skennerton, Connor T. ;
Hugenholtz, Philip ;
Tyson, Gene W. .
GENOME RESEARCH, 2015, 25 (07) :1043-1055
[45]   LPSN - List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on [J].
Parte, Aidan C. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2018, 68 (06) :1825-1829
[46]   FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments [J].
Price, Morgan N. ;
Dehal, Paramvir S. ;
Arkin, Adam P. .
PLOS ONE, 2010, 5 (03)
[47]   Marinobacter iranensis sp. nov., a slightly halophilic bacterium from a hypersaline lake [J].
Rafieyan, Shokufeh ;
Amoozegar, Mohammad Ali ;
Makzum, Somaye ;
Salimi-Ashtiani, Mahsa ;
Nikou, Mahdi Moshtaghi ;
Ventosa, Antonio ;
Sanchez-Porro, Cristina .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (10)
[48]   Shifting the genomic gold standard for the prokaryotic species definition [J].
Richter, Michael ;
Rossello-Mora, Ramon .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (45) :19126-19131
[49]  
Rodriguez L.M., 2014, MICROBE, V9, P111, DOI [DOI 10.1128/MICROBE.9.111.1, 10.1128/microbe.9.111.1]
[50]   THE NEIGHBOR-JOINING METHOD - A NEW METHOD FOR RECONSTRUCTING PHYLOGENETIC TREES [J].
SAITOU, N ;
NEI, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1987, 4 (04) :406-425