Marinobacter azerbaijanicus sp. nov., a moderately halophilic bacterium from Urmia Lake, Iran

被引:0
作者
Sanchez-Porro, Cristina [1 ]
Aghdam, Elnaz Mehdizadeh [2 ,3 ]
Montazersaheb, Soheila [2 ]
Tarhriz, Vahideh [4 ]
Kazemi, Elham [3 ]
Amoozegar, Mohammad Ali [5 ,6 ]
Ventosa, Antonio [1 ]
Hejazi, Mohammad Saeid [2 ,3 ]
机构
[1] Univ Seville, Fac Pharm, Dept Microbiol & Parasitol, Seville, Spain
[2] Tabriz Univ Med Sci, Biomed Inst, Mol Med Res Ctr, Tabriz, Iran
[3] Tabriz Univ Med Sci, Fac Pharm, Dept Pharmaceut Biotechnol, Tabriz, Iran
[4] Louisiana State Univ, Hlth Sci Ctr, Cardiovasc Ctr Excellence, New Orleans, LA USA
[5] Univ Tehran, Sch Biol, Dept Microbiol, Extremophiles Lab, Tehran, Iran
[6] Univ Tehran, Coll Sci, Ctr Excellence Phylogeny Living Organisms, Tehran, Iran
关键词
comparative genomics; halophilic bacteria; Marinobacter; new taxa; taxonomy; Urmia Lake; GENOME; ALGORITHM; SEQUENCES; SOFTWARE; STANDARD; QUALITY; TREE; TOOL;
D O I
10.1099/ijsem.0.006308
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel moderately halophilic, Gram- stain- negative and facultatively anaerobic bacterium, designated as strain TBZ242 T , was isolated from water of Urmia Lake in the Azerbaijan region of Iran. The cells were found to be rod- shaped and motile by a single polar flagellum, producing circular and yellowish colonies. The strain could grow in the presence of 0.5-10 % (w/v) NaCl (optimum, 2.5-5 %). The temperature and pH ranges for growth were 15-45 degrees C (optimum 30 degrees C) and pH 7.0-11.0 (optimum pH 8.0) on marine agar. The 16S rRNA gene sequence analysis revealed that strain TBZ242 T belonged to the genus Marinobacter , showing the highest similarities to Marinobacter algicola DG893 T (98.8 %), Marinobacter vulgaris F01 T (98.8 %), Marinobacter salarius R9SW1 T (98.5 %), Marinobacter panjinensis PJ-16 T (98.4 %), Marinobacter orientalis W62 T (98.0 %) and Marinobacter denitrificans JB2H27 T (98.0 %). The 16S rRNA and core- genome phylogenetic trees showed that strain TBZ242 T formed a distinct branch, closely related to a subclade accommodating M. vulgaris , M. orientalis , M. panjinensis , M. denitrificans , M. algicola , M. salarius and M. iranensis , within the genus Marinobacter . Average nucleotide identity and digital DNA-DNA hybridization values between strain TBZ242 T and the type strains of the related species of Marinobacter were <= 85.0 and 28.6 %, respectively, confirming that strain TBZ242 T represents a distinct species. The major cellular fatty acids of strain TBZ242 T were C 16:0 and C 16:1 omega 7 c /C 16: 1 omega 6 c and the quinone was ubiquinone Q- 9. The genomic DNA G+C content of strain TBZ242 T is 57.2 mol%. Based on phenotypic, chemotaxonomic and genomic data, strain TBZ242 T represents a novel species within the genus Marinobacter , for which the name Marinobacter azerbaijanicus sp. nov. is proposed. The type strain is TBZ242 T (= CECT 30649 T = IBRC- M 11466 T ). Genomic fragment recruitment analysis showed that this species prefers aquatic saline environments with intermediate salinities, being detected on metagenomic databases of Lake Meyghan (Iran) with 5 and 18 % salinity, respectively.
引用
收藏
页数:12
相关论文
共 64 条
[1]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[2]   The application of Marinobacter hydrocarbonoclasticus as a bioaugmentation agent for the enhanced treatment of non-sterile fish wastewater [J].
Anh, Hoang Thi Hong ;
Shahsavari, Esmaeil ;
Bott, Nathan J. ;
Ball, Andrew S. .
JOURNAL OF ENVIRONMENTAL MANAGEMENT, 2021, 291
[3]   Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs [J].
Auch, Alexander F. ;
Klenk, Hans-Peter ;
Goeker, Markus .
STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01) :142-148
[4]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[5]   Marinobacter maroccanus sp. nov., a moderately halophilic bacterium isolated from a saline soil [J].
Boujida, Nadia ;
Palau, Montserrat ;
Charfi, Saoulajan ;
Manresa, Angels ;
Senhaji, Nadia Skali ;
Abrini, Jamal ;
Minana-Galbis, David .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (01) :227-234
[6]   DISTRIBUTION OF ISOPRENOID QUINONE STRUCTURAL TYPES IN BACTERIA AND THEIR TAXONOMIC IMPLICATIONS [J].
COLLINS, MD ;
JONES, D .
MICROBIOLOGICAL REVIEWS, 1981, 45 (02) :316-354
[7]   Marinobacter aromaticivorans sp nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment [J].
Cui, Zhisong ;
Gao, Wei ;
Xu, Guangfei ;
Luan, Xiao ;
Li, Qian ;
Yin, Xiaofei ;
Huang, Deming ;
Zheng, Li .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :353-359
[8]   MUSCLE: a multiple sequence alignment method with reduced time and space complexity [J].
Edgar, RC .
BMC BIOINFORMATICS, 2004, 5 (1) :1-19
[9]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[10]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x