SenNet recommendations for detecting senescent cells in different tissues

被引:120
作者
Suryadevara, Vidyani [1 ]
Hudgins, Adam D. [2 ]
Rajesh, Adarsh [3 ]
Pappalardo, Alberto [4 ]
Karpova, Alla [5 ]
Dey, Amit K. [6 ]
Hertzel, Ann [7 ,8 ]
Agudelo, Anthony [9 ,10 ]
Rocha, Azucena [9 ,10 ]
Soygur, Bikem [11 ]
Schilling, Birgit [11 ]
Carver, Chase M. [12 ,13 ]
Aguayo-Mazzucato, Cristina [14 ]
Baker, Darren J. [13 ,15 ]
Bernlohr, David A. [7 ,8 ]
Jurk, Diana [12 ,13 ,16 ]
Mangarova, Dilyana B. [1 ]
Quardokus, Ellen M. [17 ]
Enninga, Elizabeth Ann L. [18 ]
Schmidt, Elizabeth L. [7 ,8 ]
Chen, Feng [5 ]
Duncan, Francesca E. [11 ,19 ]
Cambuli, Francesco [20 ]
Kaur, Gagandeep [21 ]
Kuchel, George A. [22 ,23 ]
Lee, Gung [12 ,13 ]
Daldrup-Link, Heike E. [1 ]
Martini, Helene [12 ,13 ]
Phatnani, Hemali [20 ,24 ]
Al-Naggar, Iman M. [22 ]
Rahman, Irfan [21 ]
Nie, Jia [25 ]
Passos, Joao F. [12 ,13 ]
Silverstein, Jonathan C. [26 ]
Campisi, Judith [11 ]
Wang, Julia [5 ]
Iwasaki, Kanako [14 ]
Barbosa, Karina [3 ]
Metis, Kay [26 ]
Nernekli, Kerem [1 ]
Niedernhofer, Laura J. [7 ,8 ]
Ding, Li [5 ]
Wang, Lichao [22 ,23 ]
Adams, Lisa C. [1 ]
Ruiyang, Liu [5 ]
Doolittle, Madison L. [12 ,13 ,27 ]
Teneche, Marcos G. [3 ]
Schafer, Marissa J. [12 ,13 ,16 ]
Xu, Ming [22 ,23 ]
Hajipour, Mohammadjavad [1 ]
机构
[1] Stanford Univ, Sch Med, Dept Radiol, Mol Imaging Program Stanford MIPS, Stanford, CA USA
[2] Columbia Univ, Dept Obstet & Gynecol, New York, NY USA
[3] Sanford Burnham Prebys Med Discovery Inst, Canc Genome & Epigenet Program, La Jolla, CA USA
[4] Columbia Univ, Dept Dermatol, New York, NY USA
[5] Washington Univ, Sch Med, Dept Med, St Louis, MO USA
[6] Natl Instute Aging, NIH, Baltimore, MD USA
[7] Univ Minnesota, Dept Biochem Mol Biol & Biophys, Minneapolis, MN USA
[8] Univ Minnesota, Inst Biol Aging & Metab, Minneapolis, MN USA
[9] Brown Univ, Dept Mol Biol Cell Biol & Biochem, Providence, RI 02912 USA
[10] Brown Univ, Ctr Biol Aging, Providence, RI 02912 USA
[11] Buck Inst Res Aging, Novato, CA USA
[12] Mayo Clin, Dept Physiol & Biomed Engn, Rochester, MN USA
[13] Robert & Arlene Kogod Ctr Aging, Rochester, MN USA
[14] Harvard Med Sch, Joslin Diabet Ctr, Islet Cell Biol & Regenerat Med, Boston, MA USA
[15] Mayo Clin, Dept Biochem & Mol Biol, Dept Pediat & Adolescent Med, Rochester, MN USA
[16] Mayo Clin, Dept Neurol, Rochester, MN USA
[17] Indiana Univ, Dept Intelligent Syst Engn, Bloomington, IN USA
[18] Mayo Clin, Dept Obstet & Gynecol, Rochester, MN USA
[19] Northwestern Univ, Feinberg Sch Med, Dept Obstet & Gynecol, Chicago, IL USA
[20] New York Genome Ctr, New York, NY USA
[21] Univ Rochester, Med Ctr, Dept Environm Med, Rochester, NY USA
[22] Univ Connecticut Hlth Ctr, UConn Ctr Aging, Farmington, CT USA
[23] Univ Connecticut Hlth Ctr, Dept Genet & Genome Sci, Farmington, CT USA
[24] Columbia Univ, Irving Med Ctr, Dept Neurol, New York, NY USA
[25] Univ Texas Hlth Sci Ctr San Antonio, Barshop Inst Longev & Aging Studies, San Antonio, TX USA
[26] Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA USA
[27] Mayo Clin, Div Endocrinol Diabet Metab, Rochester, MN USA
[28] Columbia Univ, Med Ctr, Dept Neurol, New York, NY USA
[29] Northeastern Univ, Dept Bioengn, Boston, MA USA
[30] Northeastern Univ, Dept Biol, Boston, MA USA
[31] Northeastern Univ, Barnett Inst Chem & Biol Anal, Boston, MA USA
[32] Jackson Lab Genom Med, Farmington, CT USA
[33] Univ Connecticut, Inst Syst Genom, Farmington, CT USA
[34] Columbia Univ, Dept Genet & Dev, New York, NY USA
[35] Univ Calif San Diego, Ctr Epigen, La Jolla, CA USA
[36] Yale Sch Med, Yale Ctr Res Aging, New Haven, CT USA
[37] Univ Washington, Dept Biochem, Seattle, WA USA
[38] Univ Washington, Grad Program Biol Phys Struct & Design, Seattle, WA USA
[39] Columbia Univ, Herbert Irving Inst Canc Dynam, New York, NY USA
[40] Columbia Univ, Dept Biomed Engn, New York, NY USA
[41] Uppsala Univ, Dept Immunol Genet & Pathol, Sci Life Lab, Beijer Lab Gene & Neuro Res, Uppsala, Sweden
[42] Mayo Clin, Div Nephrol & Hypertens, Rochester, MN USA
[43] Columbia Univ, Irving Med Ctr, Ctr Translat & Computat Neuroimmunol, New York, NY USA
[44] Massachusetts Gen Hosp, Ctr Regenerat Med, Boston, MA USA
[45] Harvard Univ, Harvard Stem Cell Inst, Cambridge, MA USA
[46] Harvard Med Sch, Massachusetts Gen Hosp, Dept Med, Boston, MA USA
基金
美国国家卫生研究院;
关键词
SMALL EXTRACELLULAR VESICLES; HEMATOPOIETIC STEM-CELLS; SMOOTH-MUSCLE-CELLS; DNA-DAMAGE-RESPONSE; CELLULAR SENESCENCE; SECRETORY PHENOTYPE; IN-VIVO; PULMONARY-FIBROSIS; GENE-EXPRESSION; INFLAMMATION;
D O I
10.1038/s41580-024-00738-8
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Once considered a tissue culture-specific phenomenon, cellular senescence has now been linked to various biological processes with both beneficial and detrimental roles in humans, rodents and other species. Much of our understanding of senescent cell biology still originates from tissue culture studies, where each cell in the culture is driven to an irreversible cell cycle arrest. By contrast, in tissues, these cells are relatively rare and difficult to characterize, and it is now established that fully differentiated, postmitotic cells can also acquire a senescence phenotype. The SenNet Biomarkers Working Group was formed to provide recommendations for the use of cellular senescence markers to identify and characterize senescent cells in tissues. Here, we provide recommendations for detecting senescent cells in different tissues based on a comprehensive analysis of existing literature reporting senescence markers in 14 tissues in mice and humans. We discuss some of the recent advances in detecting and characterizing cellular senescence, including molecular senescence signatures and morphological features, and the use of circulating markers. We aim for this work to be a valuable resource for both seasoned investigators in senescence-related studies and newcomers to the field. Senescent cells have complex and important roles in cancer and ageing, but they are quite rare and difficult to characterize in tissues in vivo. In this Expert Recommendation, the SenNet Biomarkers Working Group discusses recent advances in detecting and characterizing cellular senescence and provides recommendations for senescence markers in 14 human and mouse tissues.
引用
收藏
页码:1001 / 1023
页数:23
相关论文
共 301 条
[11]   Cellular hallmarks of aging emerge in the ovary prior to primordial follicle depletion [J].
Ansere, Victor A. ;
Ali-Mondal, Samim ;
Sathiaseelan, Roshini ;
Garcia, Driele N. ;
Isola, Jose V. V. ;
Henseb, Jessica D. ;
Saccon, Tatiana D. ;
Ocanas, Sarah R. ;
Tooley, Kyla B. ;
Stout, Michael B. ;
Schneider, Augusto ;
Freeman, Willard M. .
MECHANISMS OF AGEING AND DEVELOPMENT, 2021, 194
[12]   Small Extracellular Vesicles Have GST Activity and Ameliorate Senescence-Related Tissue Damage [J].
Antonio Fafian-Labora, Juan ;
Antonio Rodriguez-Navarro, Jose ;
O'Loghlen, Ana .
CELL METABOLISM, 2020, 32 (01) :71-+
[13]   Hepatocyte senescence predicts progression in non-alcohol-related fatty liver disease [J].
Aravinthan, Aloysious ;
Scarpini, Cinzia ;
Tachtatzis, Phaedra ;
Verma, Suman ;
Penrhyn-Lowe, Sue ;
Harvey, Rebecca ;
Davies, Susan E. ;
Allison, Michael ;
Coleman, Nick ;
Alexander, Graeme .
JOURNAL OF HEPATOLOGY, 2013, 58 (03) :549-556
[14]   Impacts of Telomeric Length, Chronic Hypoxia, Senescence, and Senescence-Associated Secretory Phenotype on the Development of Thoracic Aortic Aneurysm [J].
Aschacher, Thomas ;
Geisler, Daniela ;
Lenz, Verena ;
Aschacher, Olivia ;
Winkler, Bernhard ;
Schaefer, Anne-Kristin ;
Mitterbauer, Andreas ;
Wolf, Brigitte ;
Enzmann, Florian K. ;
Messner, Barbara ;
Laufer, Guenther ;
Ehrlich, Marek P. ;
Grabenwoeger, Martin ;
Bergmann, Michael .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (24)
[15]   Naturally occurring p16Ink4a-positive cells shorten healthy lifespan [J].
Baker, Darren J. ;
Childs, Bennett G. ;
Durik, Matej ;
Wijers, Melinde E. ;
Sieben, Cynthia J. ;
Zhong, Jian ;
Saltness, Rachel A. ;
Jeganathan, Karthik B. ;
Verzosa, Grace Casaclang ;
Pezeshki, Abdulmohammad ;
Khazaie, Khashayarsha ;
Miller, Jordan D. ;
van Deursen, Jan M. .
NATURE, 2016, 530 (7589) :184-+
[16]   Mitochondrial transformations in the aging human placenta [J].
Bartho, Lucy A. ;
Fisher, Joshua J. ;
Cuffe, James S. M. ;
Perkins, Anthony, V .
AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM, 2020, 319 (06) :E981-E994
[17]   The power of proteomics to monitor senescence-associated secretory phenotypes and beyond: toward clinical applications [J].
Basisty, Nathan ;
Kale, Abhijit ;
Patel, Sandip ;
Campisi, Judith ;
Schilling, Birgit .
EXPERT REVIEW OF PROTEOMICS, 2020, 17 (04) :297-308
[18]   A proteomic atlas of senescence-associated secretomes for aging biomarker development [J].
Basisty, Nathan ;
Kale, Abhijit ;
Jeon, Ok Hee ;
Kuehnemann, Chisaka ;
Payne, Therese ;
Rao, Chirag ;
Holtz, Anja ;
Shah, Samah ;
Sharma, Vagisha ;
Ferrucci, Luigi ;
Campisi, Judith ;
Schilling, Birgit .
PLOS BIOLOGY, 2020, 18 (01)
[19]   RANK links senescence to stemness in the mammary epithelia, delaying tumor onset but increasing tumor aggressiveness [J].
Benitez, Sandra ;
Cordero, Alex ;
Santamaria, Patricia G. ;
Redondo-Pedraza, Jaime ;
Rocha, Ana S. ;
Collado-Sole, Alejandro ;
Jimenez, Maria ;
Sanz-Moreno, Adrian ;
Yoldi, Guillermo ;
Santos, Juliana C. ;
De Benedictis, Ilaria ;
Gomez-Aleza, Clara ;
Da Silva-Alvarez, Sabela ;
Troule, Kevin ;
Gomez-Lopez, Gonzalo ;
Alcazar, Noelia ;
Palmero, Ignacio ;
Collado, Manuel ;
Serrano, Manuel ;
Gonzalez-Suarez, Eva .
DEVELOPMENTAL CELL, 2021, 56 (12) :1727-+
[20]   Induction of the photoaging-associated mitochondrial common deletion in vivo in normal human skin [J].
Berneburg, M ;
Plettenberg, H ;
Medve-König, K ;
Pfahlberg, A ;
Gers-Barlag, H ;
Gefeller, O ;
Krutmann, J .
JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2004, 122 (05) :1277-1283