Whole-brain radiomics for clustered federated personalization in brain tumor segmentation

被引:0
作者
Manthel, Matthis [1 ,2 ]
Duffner, Stefan [2 ]
Lartizien, Carole [1 ]
机构
[1] Univ Lyon, CNRS, INSA Lyon, UCBL,Inserm,CREATIS UMR 5220,U1294, F-69621 Villeurbanne, France
[2] Univ Lyon, INSA Lyon, CNRS, UCBL,Cent Lyon,Univ Lyon 2,LIRIS,UMR5205, F-69621 Villeurbanne, France
来源
MEDICAL IMAGING WITH DEEP LEARNING, VOL 227 | 2023年 / 227卷
关键词
Federated learning; Federated personalization; Segmentation; Brain tumor segmentation;
D O I
暂无
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Federated learning and its application to medical image segmentation have recently become a popular research topic. This training paradigm suffers from statistical heterogeneity between participating institutions' local datasets, incurring convergence slowdown as well as potential accuracy loss compared to classical training. To mitigate this effect, federated personalization emerged as the federated optimization of one model per institution. We propose a novel personalization algorithm tailored to the feature shift induced by the usage of different scanners and acquisition parameters by different institutions. This method is the first to account for both inter and intra-institution feature shift (multiple scanners used in a single institution). It is based on the computation, within each centre, of a series of radiomic features capturing the global texture of each 3D image volume, followed by a clustering analysis pooling all feature vectors transferred from the local institutions to the central server. Each computed clustered decentralized dataset (potentially including data from different institutions) then serves to finetune a global model obtained through classical federated learning. We validate our approach on the Federated Brain Tumor Segmentation 2022 Challenge dataset (FeTS2022). Our code is available at (https://github.com/MatthisManthe/radiomics_CFFL).
引用
收藏
页码:957 / 977
页数:21
相关论文
共 28 条
[1]  
Acar D. A. E., 2021, INT C MACHINE LEARNI, P21
[2]  
Anthony Reina G., 2022, Phys. Med. Biol., V67
[3]   Data Descriptor: Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features [J].
Bakas, Spyridon ;
Akbari, Hamed ;
Sotiras, Aristeidis ;
Bilello, Michel ;
Rozycki, Martin ;
Kirby, Justin S. ;
Freymann, John B. ;
Farahani, Keyvan ;
Davatzikos, Christos .
SCIENTIFIC DATA, 2017, 4
[4]  
Fallah A., 2020, Advances in Neural Information Processing Systems
[5]   Optimized U-Net for Brain Tumor Segmentation [J].
Futrega, Michal ;
Milesi, Alexandre ;
Marcinkiewicz, Michal ;
Ribalta, Pablo .
BRAINLESION: GLIOMA, MULTIPLE SCLEROSIS, STROKE AND TRAUMATIC BRAIN INJURIES, BRAINLES 2021, PT II, 2022, 12963 :15-29
[6]  
Ghosh Avishek, 2020, P 34 INT C NEUR INF
[7]  
Arivazhagan MG, 2019, Arxiv, DOI arXiv:1912.00818
[8]  
HongyiWang Mikhail Yurochkin, 2020, INT C LEARN REPR
[9]  
Karimireddy SP, 2020, PR MACH LEARN RES, V119
[10]  
Li T, 2021, PR MACH LEARN RES, V139