Draft genome sequence of Escherichia coli MTR_GS_S1457 strain isolated from a soil sample of a vegetable garden in Gazipur, Bangladesh

被引：0

作者：

Islam, Md. Saiful ^{[1
,2
]}

Pramanik, Pritom Kumar ^{[1
]}

Rana, Md. Liton ^{[1
]}

Ullah, Md. Ashek ^{[1
]}

Neloy, Fahim Haque ^{[1
]}

Ramasamy, Srinivasan ^{[3
]}

Schreinemachers, Pepijn ^{[4
]}

Oliva, Ricardo ^{[3
]}

Rahman, Md. Tanvir ^{[1
]}

机构：

[1] Bangladesh Agr Univ, Fac Vet Sci, Dept Microbiol & Hyg, Mymensingh, Bangladesh

[2] Univ Calif Davis, Dept Anim Sci, Davis, CA USA

[3] World Vegetable Ctr, Safe & Sustainable Value Chains Flagship Program, Tainan, Taiwan

[4] World Vegetable Ctr East & Southeast Asia, Hlth Diets & Enabling Impact Flagship Programs, Bangkok, Thailand

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 06期

关键词：

whole-genome sequencing; Escherichia coli; soil; environment; vegetable gardening system; Bangladesh; O157-H7;

D O I：

10.1128/mra.00021-24

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

We announce the sequence of the Escherichia coli MTR_GS_S1457 strain isolated from a soil sample of a vegetable gardening system for the first time in Bangladesh. With a length of 4,918,647 bp, this strain contained one plasmid, two CRISPR arrays, 54 predicted antibiotic resistance genes, and 81 predicted virulence factor genes.

引用

页数：3

共 15 条

[1] CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Alcock, Brian P.
Raphenya, Amogelang R.
Lau, Tammy T. Y.
Tsang, Kara K.
Bouchard, Megane
Edalatmand, Arman
Huynh, William
Nguyen, Anna-Lisa, V
Cheng, Annie A.
Liu, Sihan
Min, Sally Y.
Miroshnichenko, Anatoly
Tran, Hiu-Ki
Werfalli, Rafik E.
Nasir, Jalees A.
Oloni, Martins
Speicher, David J.
Florescu, Alexandra
Singh, Bhavya
Faltyn, Mateusz
Hernandez-Koutoucheva, Anastasia
Sharma, Arjun N.
Bordeleau, Emily
Pawlowski, Andrew C.
Zubyk, Haley L.
Dooley, Damion
Griffiths, Emma
Maguire, Finlay
Winsor, Geoff L.
Beiko, Robert G.
Brinkman, Fiona S. L.
Hsiao, William W. L.
Domselaar, Gary, V
McArthur, Andrew G.
[J]. NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) : D517 - D525
[2] Andrews S., 2010, FastQC: A Quality Control Tool for High Throughput Sequence Data
[3] Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, Anthony M.
Lohse, Marc
Usadel, Bjoern
[J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
[4] In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Carattoli, Alessandra
Zankari, Ea
Garcia-Fernandez, Aurora
Larsen, Mette Voldby
Lund, Ole
Villa, Laura
Aarestrup, Frank Moller
Hasman, Henrik
[J]. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2014, 58 (07) : 3895 - 3903
[5] PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data
Cosentino, Salvatore
Larsen, Mette Voldby
Aarestrup, Frank Moller
Lund, Ole
[J]. PLOS ONE, 2013, 8 (10):
[6] Hitchins AD., 1998, Bacteriological analytical manual., V8th, P4
[7] Survival of Escherichia coli O157:H7 in soil and on lettuce after soil fumigation
Ibekwe, A. Mark
Grieve, Catherine M.
Yang, Ching-Hong
[J]. CANADIAN JOURNAL OF MICROBIOLOGY, 2007, 53 (05) : 623 - 635
[8] Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data
Joensen, Katrine G.
Tetzschner, Anna M. M.
Iguchi, Atsushi
Aarestrup, Frank M.
Scheutz, Flemming
[J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2015, 53 (08) : 2410 - 2426
[9] Potential uptake of Escherichia coli O157:H7 from organic manure into crisphead lettuce
Johannessen, GS
Bengtsson, GB
Heier, BT
Bredholt, S
Wasteson, Y
Rorvik, LM
[J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (05) : 2221 - 2225
[10] Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
Larsen, Mette V.
Cosentino, Salvatore
Rasmussen, Simon
Friis, Carsten
Hasman, Henrik
Marvig, Rasmus Lykke
Jelsbak, Lars
Sicheritz-Ponten, Thomas
Ussery, David W.
Aarestrup, Frank M.
Lund, Ole
[J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2012, 50 (04) : 1355 - 1361

← 1 2 →