Bioinformatic Identification of TP53 Gene Mutation Hotspots in Colorectal Cancer

被引:1
作者
Kovacs, Zsolt [1 ,2 ]
Sugimura, Haruhiko [3 ]
Gyorgy, Tamas Attila [1 ,2 ]
Osvath, Eva [1 ,2 ,4 ]
Manirakiza, Felix [5 ]
Gurzu, Simona [1 ,2 ,6 ]
机构
[1] George Emil Palade Univ Med Pharm Sci & Technol Ta, Dept Pathol, Targu Mures 540139, Romania
[2] Res Ctr Oncopathol & Translat Res CCOMT, Targu Mures 540139, Romania
[3] Sasaki Fdn, Sasaki Inst, Tokyo 1010062, Japan
[4] Clin Cty Hosp, Dept Oncol, Targu Mures 540140, Romania
[5] Univ Rwanda, Sch Med, Coll Med & Hlth Sci, Dept Pathol, POB 3286, Kigali, Rwanda
[6] Romanian Acad Med Sci, Bucharest 030167, Romania
关键词
TP53; gene; colorectal cancer; bioinformatics; mutation hotspots; P53; DATABASE; FAMILY;
D O I
10.3390/ijms25126612
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Mutations and inactivation of the TP53 gene are frequently observed in various types of malignancies. Precise knowledge of the genetic structure and detection of mutation hotspots are crucial, as these indicate a high probability of developing cancer. The aim of our study was to perform the bioinformatic detection of mutation hotspots in the TP53 gene in patients diagnosed with malignant colon neoplasms using self-developed software (version 1). We compared TP53 gene sequences from 50 healthy individuals with those from 50 patients diagnosed with colorectal carcinoma. Of the 50 samples from cancer patients, the most frequent mutations were observed in exons 5 and 8 (12 mutations per exon) and gene sequences of 12 samples, which differed from those of the 50 samples from healthy individuals. Based on our results, the distribution of mutations in the TP53 gene structure was not even across different exons. By comparing the gene sequences of healthy individuals with those of colon cancer samples, we conclude that structural changes occurring in similar gene regions are not associated with increases in susceptibility to malignancies in every case, namely, that the pathological mechanism is multifactorial.
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页数:12
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